College of Environment, Zhejiang University of Technology, Hangzhou 310032, China.
Key Laboratory of Microbial Technology and Bioinformatics of Zhejiang Province, Hangzhou 310012, China.
Water Res. 2023 Oct 1;244:120488. doi: 10.1016/j.watres.2023.120488. Epub 2023 Aug 14.
Oceans serve as global reservoirs of antibiotic-resistant bacteria and antibiotic resistance genes (ARGs). However, little is known about the traits and expression of ARGs in response to environmental factors. We analyzed 347 metagenomes and 182 metatranscriptomes to determine the distribution, hosts, and expression of ARGs in oceans. Our study found that the diversity and abundance of ARGs varied with latitude and depth. The core marine resistome mainly conferred glycopeptide and multidrug resistance. The hosts of this resistome were mainly limited to the core marine microbiome, with phylogenetic barriers to the horizontal transfer of ARGs, transfers being more frequent within species than between species. Sixty-five percent of the marine ARGs identified were expressed. More than 90% of high-risk ARGs were more likely to be expressed. Anthropogenic activity might affect the expression of ARGs by altering nitrate and phosphate concentrations and ocean temperature. Machine-learning models predict >97% of marine ARGs will change expression by 2100. High-risk ARGs will shift to low latitudes and regions with high anthropogenic activity, such as the Pacific and Atlantic Oceans. Certain ARGs serve a dual role in antibiotic resistance and potentially participate in element cycling, along with other unknown functions. Determining whether changes in ARG expression are beneficial to ecosystems and human health is challenging without comprehensive understanding of their functions. Our study identified a core resistome in the oceans and quantified the expression of ARGs for the development of future control strategies under global change.
海洋是抗生素耐药菌和抗生素耐药基因 (ARGs) 的全球储库。然而,人们对环境因素影响下 ARGs 的特征和表达知之甚少。我们分析了 347 个宏基因组和 182 个宏转录组,以确定海洋中 ARGs 的分布、宿主和表达。我们的研究发现,ARGs 的多样性和丰度随纬度和深度而变化。核心海洋抗药性主要赋予糖肽和多药耐药性。该抗药性的宿主主要局限于核心海洋微生物组,具有 ARGs 水平转移的种间进化障碍,种内转移比种间转移更为频繁。鉴定出的 65%的海洋 ARGs 被表达。超过 90%的高风险 ARGs 更有可能被表达。人为活动通过改变硝酸盐和磷酸盐浓度以及海洋温度可能会影响 ARGs 的表达。机器学习模型预测,到 2100 年,超过 97%的海洋 ARGs 将发生表达变化。高风险 ARGs 将转移到低纬度和人类活动高度活跃的地区,如太平洋和大西洋。某些 ARGs 在抗生素耐药性方面具有双重作用,并可能与其他未知功能一起参与元素循环。如果没有对其功能的全面了解,确定 ARG 表达的变化是否对生态系统和人类健康有益是具有挑战性的。我们的研究在海洋中确定了一个核心抗药性组,并量化了 ARGs 的表达,为未来在全球变化下制定控制策略提供了依据。
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