State Key Laboratory of Crop Genetics and Germplasm Enhancement and Utilization, Jiangsu Provincial Key Laboratory for Organic Solid Waste Utilization, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
College of Life Sciences, University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, 100049, Beijing, China.
ISME J. 2023 Nov;17(11):1851-1861. doi: 10.1038/s41396-023-01498-7. Epub 2023 Aug 21.
Microorganisms play a key role in arsenic (As) biogeochemistry, transforming As species between inorganic and organic forms and different oxidation states. Microbial As methylation is enhanced in anoxic paddy soil, producing primarily dimethylarsenic (DMAs), which can cause rice straighthead disease and large yield losses. DMAs can also be demethylated in paddy soil, but the microorganisms driving this process remain unclear. In this study, we showed that the enrichment culture of methylotrophic methanogens from paddy soil demethylated pentavalent DMAs(V) efficiently. DMAs(V) was reduced to DMAs(III) before demethylation. 16S rRNA gene diversity and metagenomic analysis showed that Methanomassiliicoccus dominated in the enrichment culture, with Methanosarcina and Methanoculleus also being present. We isolated Methanomassiliicoccus luminyensis CZDD1 and Methanosarcina mazei CZ1 from the enrichment culture; the former could partially demethylate trivalent DMAs(III) but not DMAs(V) and the latter could demethylate neither. Addition of strain CZDD1 to the enrichment culture greatly accelerated DMAs(V) demethylation. Demethylation of DMAs(V) in the enrichment culture was suppressed by ampicillin, suggesting the involvement of bacteria. We isolated three anaerobic bacterial strains including Clostridium from the enrichment culture, which could produce hydrogen and reduce DMAs(V) to DMAs(III). Furthermore, augmentation of the Methanomassiliicoccus-Clostridium coculture to a paddy soil decreased DMAs accumulation by rice and alleviated straighthead disease. The results reveal a synergistic relationship whereby anaerobic bacteria reduce DMAs(V) to DMAs(III) for demethylation by Methanomassiliicoccus and also produce hydrogen to promote the growth of Methanomassiliicoccus; enhancing their populations in paddy soil can help alleviate rice straighthead disease.
微生物在砷(As)生物地球化学中起着关键作用,它们将砷的物种在无机和有机形式以及不同的氧化态之间转化。在缺氧的稻田土壤中,微生物砷甲基化作用增强,主要产生二甲基砷(DMAs),这会导致水稻直头病和大量减产。DMAs 也可以在稻田土壤中脱甲基,但驱动这一过程的微生物仍不清楚。在本研究中,我们表明,从稻田中富集培养的甲基营养型产甲烷菌能够有效地将五价 DMAs(V)脱甲基。DMAs(V)在脱甲基前被还原为 DMAs(III)。16S rRNA 基因多样性和宏基因组分析表明,在富集培养中,Methanomassiliicoccus 占主导地位,同时也存在 Methanosarcina 和 Methanoculleus。我们从富集培养中分离到了 Methanomassiliicoccus luminyensis CZDD1 和 Methanosarcina mazei CZ1;前者可以部分脱甲基三价 DMAs(III),但不能脱甲基五价 DMAs(V),后者则不能脱甲基。将菌株 CZDD1 添加到富集培养中可以大大加速 DMAs(V)的脱甲基作用。在富集培养中,DMAs(V)的脱甲基作用被氨苄青霉素抑制,表明涉及细菌。我们从富集培养中分离到了三种包括梭菌在内的厌氧细菌菌株,它们可以产生氢气并将 DMAs(V)还原为 DMAs(III)。此外,将 Methanomassiliicoccus-Clostridium 共培养物添加到稻田土壤中,可以减少水稻对 DMAs 的积累并缓解直头病。这些结果揭示了一种协同关系,即厌氧细菌将 DMAs(V)还原为 DMAs(III),供 Methanomassiliicoccus 脱甲基,同时产生氢气来促进 Methanomassiliicoccus 的生长;增强它们在稻田土壤中的种群可以帮助缓解水稻直头病。