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ZENBU报告:用于交互式可视化和传播基因组规模数据的图形化网络门户构建工具。

ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data.

作者信息

Severin Jessica, Agrawal Saumya, Ramilowski Jordan A, Deviatiiarov Ruslan, Shin Jay W, Carninci Piero, de Hoon Michiel

机构信息

RIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.

Advanced Medical Research Center, Yokohama City University, Yokohama, Japan.

出版信息

NAR Genom Bioinform. 2023 Aug 21;5(3):lqad075. doi: 10.1093/nargab/lqad075. eCollection 2023 Sep.

Abstract

In the genomic era, data dissemination and visualization is an integral part of scientific publications and research projects involving international consortia producing massive genome-wide data sets, intra-organizational collaborations, or individual labs. However, creating custom supporting websites is oftentimes impractical due to the required programming effort, web server infrastructure, and data storage facilities, as well as the long-term maintenance burden. ZENBU-Reports (https://fantom.gsc.riken.jp/zenbu/reports) is a web application to create interactive scientific web portals by using graphical interfaces while providing storage and secured collaborative sharing for data uploaded by users. ZENBU-Reports provides the scientific visualization elements commonly used in supplementary websites, publications and presentations, presenting a complete solution for the interactive display and dissemination of data and analysis results during the full lifespan of a scientific project both during the active research phase and after publication of the results.

摘要

在基因组时代,数据传播与可视化是科学出版物以及涉及国际联盟(产生大量全基因组数据集)、组织内部合作或单个实验室的研究项目的一个组成部分。然而,由于所需的编程工作、网络服务器基础设施、数据存储设施以及长期维护负担,创建定制的支持网站往往不切实际。ZENBU-Reports(https://fantom.gsc.riken.jp/zenbu/reports)是一个网络应用程序,它通过图形界面创建交互式科学门户网站,同时为用户上传的数据提供存储和安全的协作共享。ZENBU-Reports提供了补充网站、出版物和演示中常用的科学可视化元素,为科学项目整个生命周期(包括活跃研究阶段和结果发表后)的数据和分析结果的交互式显示与传播提供了一个完整的解决方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16dd/10440783/1ae34be77422/lqad075fig1.jpg

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