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锦葵科植物的完整叶绿体基因组。

The complete chloroplast genome of (Malvaceae).

作者信息

Liu Rong, Xie Li, Wang Dan

机构信息

School of Preclinical Medicine, Chengdu University, Chengdu, China.

Department of Pharmacy, Sichuan Nursing Vocational College, Chengdu, China.

出版信息

Mitochondrial DNA B Resour. 2023 Aug 21;8(8):886-889. doi: 10.1080/23802359.2023.2246670. eCollection 2023.

Abstract

In this study, we assembled the complete chloroplast (cp) genome of using high-throughput Illumina sequencing reads. The resulting plastome assembly displayed a typical quadripartite structure with a total length of 160,332 bp, containing a pair of inverted repeat regions (IRs) of 26,313 bp separated by a large single-copy region (LSC) of 88,750 bp and a small single-copy region (SSC) of 18,956 bp. The cp genome contained 128 genes, and its overall GC content was 36.96%. Phylogenetic analysis among and five other Malvaceae species demonstrated that was closely related to and . The cp genome presented in this study will lay a good foundation for further genetic and genomic studies of the genus as well as Malvaceae.

摘要

在本研究中,我们利用高通量Illumina测序读数组装了[物种名称]的完整叶绿体(cp)基因组。所得的质体基因组组装显示出典型的四分体结构,总长度为160,332 bp,包含一对26,313 bp的反向重复区域(IRs),由一个88,750 bp的大单拷贝区域(LSC)和一个18,956 bp的小单拷贝区域(SSC)隔开。[物种名称]的cp基因组包含128个基因,其总体GC含量为36.96%。[物种名称]与其他五个锦葵科物种之间的系统发育分析表明,[物种名称]与[相关物种1]和[相关物种2]密切相关。本研究中呈现的[物种名称]cp基因组将为该属以及锦葵科进一步的遗传和基因组研究奠定良好基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69ef/10443977/ad5421b0e755/TMDN_A_2246670_F0001_C.jpg

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