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一种用于快速且经济高效地鉴定五种最重要致病物种的多重PCR检测方法的开发

The Development of a Multiplex PCR Assay for Fast and Cost-Effective Identification of the Five Most Significant Pathogenic Species.

作者信息

Vasco-Julio David, Huilca-Ibarra María, Ledesma Yanua, Echeverria Gustavo, Guerrero-Freire Salome, Jagielski Tomasz, Bastidas-Caldes Carlos, de Waard Jacobus H

机构信息

One Health Research Group, Universidad de Las Américas, Quito 170530, Ecuador.

Posgrado en Ciencias Biológicas, Universidad Nacional Autónoma de México, Unidad de Posgrado, Edificio D, Circuito de Posgrados, Ciudad Universitaria, Coyoacán C.P. 04510, Mexico.

出版信息

Pathogens. 2023 Aug 7;12(8):1018. doi: 10.3390/pathogens12081018.

Abstract

A multiplex PCR system (m-PCR) has been developed to accurately differentiate the five most important pathogenic species, including the three species associated with infection in dairy cattle (, , and ) and the two species associated with human infections ( and ). The method is low-cost since it employs a simple "heat-shock" method in a TE buffer for DNA extraction. Furthermore, it requires only primers, a Taq polymerase, an agarose gel, and a molecular weight marker for identification. The method was based on published cytochrome B sequences and was evaluated using reference strains from each of the five species. The validity of the method was confirmed by identifying 50 strains isolated from milk samples. The specificity was tested in silico and with experimental PCR trials, showing no cross-reactions with other species, as well as with bacteria, fungi, cows, algae, animals, or humans. The method could detect mixed infections involving two or three species, providing a rapid test that delivers results within three hours.

摘要

已开发出一种多重聚合酶链反应系统(m-PCR),用于准确区分五种最重要的致病物种,包括与奶牛感染相关的三种物种(、和)以及与人类感染相关的两种物种(和)。该方法成本低廉,因为它在TE缓冲液中采用简单的“热休克”方法进行DNA提取。此外,它仅需引物、Taq聚合酶、琼脂糖凝胶和分子量标记物即可进行鉴定。该方法基于已发表的细胞色素B序列,并使用这五个物种各自的参考菌株进行评估。通过鉴定从牛奶样品中分离出的50株菌株,证实了该方法的有效性。通过计算机模拟和实验性PCR试验测试了其特异性,结果表明该方法与其他物种以及细菌、真菌、奶牛、藻类、动物或人类均无交叉反应。该方法可以检测涉及两种或三种物种的混合感染,提供一种在三小时内即可得出结果的快速检测方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca28/10459208/a2d6f09f199f/pathogens-12-01018-g001.jpg

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