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关于氮杂-18-冠-6萃取剂脂肪族不饱和侧链在不同溶剂介质中对锶包封的结合亲和力及参与情况的计算洞察。

Computational insight towards the binding affinity and participation of aliphatic unsaturated sidearms of aza-18-crown-6 extractants for Sr encapsulation in different solvent medium.

作者信息

Patidar Rajesh, Gupta Hariom, Savita Aman

机构信息

CSIR-Advanced Materials and Processes Research Institute, Bhopal, Madhya Pradesh, 462026, India.

Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.

出版信息

J Mol Model. 2023 Aug 25;29(9):294. doi: 10.1007/s00894-023-05701-6.

Abstract

CONTEXT

Macrocyclic extractants capture cations in solution phase; therefore, their structures and energetics in different solvents are worth investigating. In this computational research work, the optimized geometry of three aza-18-crown-6 extractants (1-3) has been obtained in suitable solvent mediums to work out the influence of the solvation on their binding affinity with Sr. The designed macrocyclic extractants are remarkable as the N-substituted side chain bears the rarely examined simple aliphatic unsaturated double and triple bond. All significant structural perturbations of the macro ring wherein Sr binds are examined. Prediction of the auxiliary effect of the simple aliphatic unsaturated side arm on the binding of Sr through solvent competition or cation-pi interaction is undertaken. The binding affinity of the complex formed in the solvent and gas phases is calculated. Results obtained in this study favor the utilization of solvents of low dielectric constant (CHCl and DCM) for effective binding of Sr ions by the extractants.

METHOD

All DFT calculations were performed using the Gaussian 09 program. The optimized geometries and their structural features were visualized by GaussView. Density functional calculation involving B3LYP functional and LANL2DZ basis set was employed to obtain optimized geometry and energy of the extractants and their Sr complex. The solvation effects were considered by employing the calculations with the polarized continuum model (PCM). The computational method's reliability was assured by comparing the optimized structure with that of X-ray reported structure of a similar type of complex.

摘要

背景

大环萃取剂在溶液相中捕获阳离子;因此,它们在不同溶剂中的结构和能量值得研究。在这项计算研究工作中,已在合适的溶剂介质中获得了三种氮杂-18-冠-6萃取剂(1-3)的优化几何结构,以研究溶剂化对它们与Sr结合亲和力的影响。所设计的大环萃取剂很显著,因为N-取代侧链带有很少被研究的简单脂肪族不饱和双键和三键。研究了Sr结合的大环的所有显著结构扰动。通过溶剂竞争或阳离子-π相互作用预测简单脂肪族不饱和侧链对Sr结合的辅助作用。计算了在溶剂相和气相中形成的配合物的结合亲和力。本研究获得的结果有利于利用低介电常数的溶剂(CHCl和DCM)使萃取剂有效结合Sr离子。

方法

所有DFT计算均使用Gaussian 09程序进行。通过GaussView可视化优化的几何结构及其结构特征。采用涉及B3LYP泛函和LANL2DZ基组的密度泛函计算来获得萃取剂及其Sr配合物的优化几何结构和能量。通过使用极化连续介质模型(PCM)的计算来考虑溶剂化效应。通过将优化结构与类似类型配合物的X射线报道结构进行比较,确保了计算方法的可靠性。

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