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摆动与摇晃:在蛋白酶体生物发生过程中对构象动力学的管理和利用。

Wiggle and Shake: Managing and Exploiting Conformational Dynamics during Proteasome Biogenesis.

机构信息

Department of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, FL 32306, USA.

出版信息

Biomolecules. 2023 Aug 6;13(8):1223. doi: 10.3390/biom13081223.

DOI:10.3390/biom13081223
PMID:37627288
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10452565/
Abstract

The 26S proteasome is the largest and most complicated protease known, and changes to proteasome assembly or function contribute to numerous human diseases. Assembly of the 26S proteasome from its ~66 individual polypeptide subunits is a highly orchestrated process requiring the concerted actions of both intrinsic elements of proteasome subunits, as well as assistance by extrinsic, dedicated proteasome assembly chaperones. With the advent of near-atomic resolution cryo-electron microscopy, it has become evident that the proteasome is a highly dynamic machine, undergoing numerous conformational changes in response to ligand binding and during the proteolytic cycle. In contrast, an appreciation of the role of conformational dynamics during the biogenesis of the proteasome has only recently begun to emerge. Herein, we review our current knowledge of proteasome assembly, with a particular focus on how conformational dynamics guide particular proteasome biogenesis events. Furthermore, we highlight key emerging questions in this rapidly expanding area.

摘要

26S 蛋白酶体是已知最大、最复杂的蛋白酶,其组装或功能的改变与许多人类疾病有关。由大约 66 个单独多肽亚基组成的 26S 蛋白酶体的组装是一个高度协调的过程,需要蛋白酶体亚基的内在元件的协同作用,以及由外在的、专门的蛋白酶体组装伴侣的辅助。随着近原子分辨率冷冻电子显微镜的出现,很明显,蛋白酶体是一个高度动态的机器,在配体结合和在蛋白水解循环期间会发生许多构象变化。相比之下,最近才开始认识到构象动力学在蛋白酶体生物发生过程中的作用。本文综述了我们目前对蛋白酶体组装的认识,特别关注构象动力学如何指导特定的蛋白酶体生物发生事件。此外,我们还强调了这个快速发展领域中的关键新问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/97644154a7db/biomolecules-13-01223-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/46042b0c5eb4/biomolecules-13-01223-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/c4413ea8f4f9/biomolecules-13-01223-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/a408355d028f/biomolecules-13-01223-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/dc9d692870c4/biomolecules-13-01223-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/a64166ed4cea/biomolecules-13-01223-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/228170dc136f/biomolecules-13-01223-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/97644154a7db/biomolecules-13-01223-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/46042b0c5eb4/biomolecules-13-01223-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/c4413ea8f4f9/biomolecules-13-01223-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/a408355d028f/biomolecules-13-01223-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/dc9d692870c4/biomolecules-13-01223-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/a64166ed4cea/biomolecules-13-01223-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/228170dc136f/biomolecules-13-01223-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/702f/10452565/97644154a7db/biomolecules-13-01223-g007.jpg

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本文引用的文献

1
Assembly chaperone Nas6 selectively destabilizes 26S proteasomes with defective regulatory particle-core particle interfaces.组装伴侣 Nas6 选择性地使具有缺陷的调节颗粒-核心颗粒界面的 26S 蛋白酶体不稳定。
J Biol Chem. 2023 Feb;299(2):102894. doi: 10.1016/j.jbc.2023.102894. Epub 2023 Jan 10.
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Ubiquitin modulates 26 proteasome conformational dynamics and promotes substrate degradation.泛素调节 26S 蛋白酶体构象动力学并促进底物降解。
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Assembly checkpoint of the proteasome regulatory particle is activated by coordinated actions of proteasomal ATPase chaperones.
蛋白酶体调节颗粒的组装检查点通过蛋白酶体 ATP 酶伴侣的协调作用被激活。
Cell Rep. 2022 Jun 7;39(10):110918. doi: 10.1016/j.celrep.2022.110918.
4
Structures of chaperone-associated assembly intermediates reveal coordinated mechanisms of proteasome biogenesis.伴侣蛋白相关组装中间体的结构揭示了蛋白酶体生物发生的协调机制。
Nat Struct Mol Biol. 2021 May;28(5):418-425. doi: 10.1038/s41594-021-00583-9. Epub 2021 Apr 12.
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Discovery of a Regulatory Subunit of the Yeast Fatty Acid Synthase.酵母脂肪酸合成酶调控亚基的发现。
Cell. 2020 Mar 19;180(6):1130-1143.e20. doi: 10.1016/j.cell.2020.02.034. Epub 2020 Mar 10.
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Specific lid-base contacts in the 26s proteasome control the conformational switching required for substrate degradation.26S 蛋白酶体中的特定盖基底接触控制着底物降解所需的构象转换。
Elife. 2019 Nov 28;8:e49806. doi: 10.7554/eLife.49806.
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Proteasome subunit α1 overexpression preferentially drives canonical proteasome biogenesis and enhances stress tolerance in yeast.蛋白酶体亚基α1 过表达优先驱动经典蛋白酶体生物发生并增强酵母的应激耐受性。
Sci Rep. 2019 Aug 27;9(1):12418. doi: 10.1038/s41598-019-48889-5.
8
In-depth Analysis of the Lid Subunits Assembly Mechanism in Mammals.哺乳动物中 lid 亚基组装机制的深入分析。
Biomolecules. 2019 May 31;9(6):213. doi: 10.3390/biom9060213.
9
The 26S Proteasome Utilizes a Kinetic Gateway to Prioritize Substrate Degradation.26S 蛋白酶体利用动力学门控来优先降解底物。
Cell. 2019 Apr 4;177(2):286-298.e15. doi: 10.1016/j.cell.2019.02.031. Epub 2019 Mar 28.
10
An Allosteric Interaction Network Promotes Conformation State-Dependent Eviction of the Nas6 Assembly Chaperone from Nascent 26S Proteasomes.别构相互作用网络促进新生 26S 蛋白酶体中 Nas6 组装伴侣构象状态依赖性逐出。
Cell Rep. 2019 Jan 8;26(2):483-495.e5. doi: 10.1016/j.celrep.2018.12.042.