College of Agronomy and Biotechnology, Southwest University, Chongqing 400715, China.
Engineering Research Center of South Upland Agriculture, Ministry of Education, Chongqing 400715, China.
Int J Mol Sci. 2023 Aug 17;24(16):12888. doi: 10.3390/ijms241612888.
Transcription factors containing a CCCH structure (C3H) play important roles in plant growth and development, and their stress response, but research on the gene family in potato has not been reported yet. In this study, we used bioinformatics to identify 50 genes in potato and named them to according to their location on chromosomes, and we analyzed their physical and chemical properties, chromosome location, phylogenetic relationship, gene structure, collinearity relationship, and cis-regulatory element. The gene expression pattern analysis showed that many genes are involved in potato growth and development, and their response to diverse environmental stresses. Furthermore, RT-qPCR data showed that the expression of many genes was induced by high temperatures, indicating that genes may play important roles in potato response to heat stress. In addition, Some genes were predominantly expressed in the stolon and developing tubers, suggesting that these genes may be involved in the regulation of tuber development. Together, these results provide new information on genes and will be helpful for further revealing the function of genes in the heat stress response and tuber development in potato.
转录因子含有 CCCH 结构 (C3H),在植物生长发育及其对压力的响应中发挥着重要作用,但目前尚未有关于马铃薯基因家族的研究。本研究运用生物信息学方法在马铃薯中鉴定出 50 个基因,根据其在染色体上的位置进行命名,并对其理化性质、染色体定位、系统进化关系、基因结构、共线性关系和顺式作用元件进行分析。基因表达模式分析表明,许多基因参与了马铃薯的生长发育及其对各种环境胁迫的响应。此外,RT-qPCR 数据表明,许多基因受到高温的诱导表达,表明这些基因可能在马铃薯对热应激的响应中发挥重要作用。另外,一些基因在匍匐茎和发育中的块茎中主要表达,表明这些基因可能参与了块茎发育的调控。综上所述,这些结果为基因提供了新的信息,有助于进一步揭示基因在马铃薯热应激响应和块茎发育中的功能。