Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France; Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), 91190 Gif sur Yvette, France.
UMR MIA Paris-Saclay, Université Paris-Saclay, AgroParisTech, INRAE, 91120 Palaiseau, France.
Plant Commun. 2023 Sep 11;4(5):100676. doi: 10.1016/j.xplc.2023.100676. Epub 2023 Aug 28.
Plant defense responses involve several biological processes that allow plants to fight against pathogenic attacks. How these different processes are orchestrated within organs and depend on specific cell types is poorly known. Here, using single-cell RNA sequencing (scRNA-seq) technology on three independent biological replicates, we identified several cell populations representing the core transcriptional responses of wild-type Arabidopsis leaves inoculated with the bacterial pathogen Pseudomonas syringae DC3000. Among these populations, we retrieved major cell types of the leaves (mesophyll, guard, epidermal, companion, and vascular S cells) with which we could associate characteristic transcriptional reprogramming and regulators, thereby specifying different cell-type responses to the pathogen. Further analyses of transcriptional dynamics, on the basis of inference of cell trajectories, indicated that the different cell types, in addition to their characteristic defense responses, can also share similar modules of gene reprogramming, uncovering a ubiquitous antagonism between immune and susceptible processes. Moreover, it appears that the defense responses of vascular S cells, epidermal cells, and mesophyll cells can evolve along two separate paths, one converging toward an identical cell fate, characterized mostly by lignification and detoxification functions. As this divergence does not correspond to the differentiation between immune and susceptible cells, we speculate that this might reflect the discrimination between cell-autonomous and non-cell-autonomous responses. Altogether our data provide an upgraded framework to describe, explore, and explain the specialization and the coordination of plant cell responses upon pathogenic challenge.
植物防御反应涉及几个生物学过程,使植物能够抵御病原体的攻击。这些不同的过程如何在器官内协调,并依赖于特定的细胞类型,目前知之甚少。在这里,我们使用单细胞 RNA 测序(scRNA-seq)技术在三个独立的生物学重复中,鉴定了几个代表野生型拟南芥叶片接种细菌病原体丁香假单胞菌 DC3000 后核心转录反应的细胞群体。在这些群体中,我们检索到叶片的主要细胞类型(叶肉、保卫、表皮、伴胞和维管束 S 细胞),我们可以将其与特征转录重编程和调节剂相关联,从而指定不同细胞类型对病原体的反应。基于细胞轨迹推断的转录动力学进一步分析表明,除了其特征防御反应外,不同的细胞类型还可以共享相似的基因重编程模块,揭示了免疫和易感过程之间普遍存在的拮抗作用。此外,似乎血管 S 细胞、表皮细胞和叶肉细胞的防御反应可以沿着两条不同的路径进化,其中一条路径汇聚到一个相同的细胞命运,主要表现为木质化和解毒功能。由于这种分歧与免疫和易感细胞之间的分化不一致,我们推测这可能反映了细胞自主和非细胞自主反应之间的区分。总的来说,我们的数据提供了一个升级的框架来描述、探索和解释植物细胞对病原体挑战的特化和协调。