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染色体计数数据库 (CCDB)。

The Chromosome Counts Database (CCDB).

机构信息

School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.

出版信息

Methods Mol Biol. 2023;2703:123-129. doi: 10.1007/978-1-0716-3389-2_10.

Abstract

For decades, plant biologists have been interested in the determination and documentation of chromosome numbers for extant taxa. This central cytological character has been used as an important phylogenetic marker and as an indicator for major genomic events such as polyploidy and dysploidy. Due to their significance and the relative ease by which chromosome numbers can be obtained, chromosome numbers have been extensively recorded across the plant kingdom and documented in a wide variety of resources. This makes the collection process a wearing task, often leading to partial data retrieval. In 2015, the Chromosome Counts Database (CCDB) was assembled, being an online unified community resource. This database compiles dozens of different chromosome counts sources, of which a significant portion had been unavailable before in a digitized, searchable format. The vast amount of data assembled in CCDB has already enabled a large number of analyses to examine the evolution of different plant hierarchies, as well as the application of various follow-up analyses, such as ploidy-level inference using chromEvol. CCDB ( http://ccdb.tau.ac.il/ ) encourages data sharing among the botanical community and is expected to continue expanding as additional chromosome numbers are recorded.

摘要

几十年来,植物生物学家一直对现存分类群的染色体数目进行确定和记录感兴趣。这个核心细胞学特征已被用作重要的系统发育标记,并作为多倍体和非整倍体等主要基因组事件的指标。由于其重要性以及获得染色体数目的相对容易性,染色体数目已在植物界得到广泛记录,并在各种资源中进行了详细记录。这使得收集过程成为一项繁琐的任务,通常导致部分数据检索。2015 年,染色体计数数据库(CCDB)被组装,成为一个在线统一的社区资源。该数据库汇集了数十种不同的染色体计数来源,其中很大一部分以前是以数字化、可搜索的格式不可用的。在 CCDB 中汇集的大量数据已经能够进行大量分析,以检查不同植物层次的进化,以及应用各种后续分析,例如使用 chromEvol 进行倍性水平推断。CCDB(http://ccdb.tau.ac.il/)鼓励植物学界之间的数据共享,并有望随着更多染色体数目的记录而继续扩展。

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