Department of Biological, Geological, and Environmental Sciences, University of Bologna, Bologna, Italy.
Genome Biol Evol. 2023 Nov 1;15(11). doi: 10.1093/gbe/evad159.
Among Metazoa, bivalves have the highest lifespan disparity, ranging from 1 to 500+ years, making them an exceptional testing ground to understand mechanisms underlying aging and the evolution of extended longevity. Nevertheless, comparative molecular evolution has been an overlooked approach in this instance. Here, we leveraged transcriptomic resources spanning 30 bivalve species to unravel the signatures of convergent molecular evolution in four long-lived species: Margaritifera margaritifera, Elliptio complanata, Lampsilis siliquoidea, and Arctica islandica (the latter represents the longest-lived noncolonial metazoan known so far). We applied a comprehensive approach-which included inference of convergent dN/dS, convergent positive selection, and convergent amino acid substitution-with a strong focus on the reduction of false positives. Genes with convergent evolution in long-lived bivalves show more physical and functional interactions to each other than expected, suggesting that they are biologically connected; this interaction network is enriched in genes for which a role in longevity has been experimentally supported in other species. This suggests that genes in the network are involved in extended longevity in bivalves and, consequently, that the mechanisms underlying extended longevity are-at least partially-shared across Metazoa. Although we believe that an integration of different genes and pathways is required for the extended longevity phenotype, we highlight the potential central roles of genes involved in cell proliferation control, translational machinery, and response to hypoxia, in lifespan extension.
在后生动物中,双壳类动物的寿命差异最大,范围从 1 年到 500 年以上,使它们成为一个特殊的试验场,可以了解衰老和延长寿命的进化机制。然而,在这种情况下,比较分子进化一直被忽视。在这里,我们利用跨越 30 种双壳类物种的转录组资源,揭示了四个长寿物种(Margaritifera margaritifera、Elliptio complanata、Lampsilis siliquoidea 和 Arctica islandica)中趋同分子进化的特征。后两种动物代表了目前已知的寿命最长的非群居后生动物。我们采用了一种全面的方法,包括推断趋同 dN/dS、趋同正选择和趋同氨基酸替换,并特别注重减少假阳性。在长寿双壳类动物中具有趋同进化的基因彼此之间具有更多的物理和功能相互作用,这表明它们在生物学上是相互联系的;这个相互作用网络富含在其他物种中已经通过实验证实与长寿有关的基因。这表明网络中的基因参与了双壳类动物的长寿,因此,后生动物中延长寿命的机制至少部分是共享的。虽然我们认为需要整合不同的基因和途径才能实现延长寿命的表型,但我们强调了参与细胞增殖控制、翻译机制和对缺氧反应的基因在延长寿命方面的潜在核心作用。