Phadke Rhushikesh A, Wetzel Austin M, Fournier Luke A, Sha Mingqi, Padró-Luna Nicole M, Cruz-Martín Alberto
Molecular Biology, Cell Biology and Biochemistry Program, Boston University, Boston, MA, USA.
Department of Biomedical Engineering, Boston University, Boston, MA, USA.
bioRxiv. 2023 Aug 23:2023.08.22.554365. doi: 10.1101/2023.08.22.554365.
Understanding the rich behavioral data generated by mice is essential for deciphering the function of the healthy and diseased brain. However, the current landscape lacks effective, affordable, and accessible methods for acquiring such data, especially when employing multiple cameras simultaneously. We have developed REVEALS (odent Bhaior Multi-camraboratory Acquiition), a graphical user interface (GUI) written in python for acquiring rodent behavioral data via commonly used USB3 cameras. REVEALS allows for user-friendly control of recording from one or multiple cameras simultaneously while streamlining the data acquisition process, enabling researchers to collect and analyze large datasets efficiently. We release this software package as a stand-alone, open-source framework for researchers to use and modify according to their needs. We describe the details of the GUI implementation, including the camera control software and the video recording functionality. We validate results demonstrating the GUI's stability, reliability, and accuracy for capturing and analyzing rodent behavior using DeepLabCut pose estimation in both an object and social interaction assay. REVEALS can also be incorporated into other custom pipelines to analyze complex behavior, such as MoSeq. In summary, REVEALS provides an interface for collecting behavioral data from one or multiple perspectives that, combined with deep learning algorithms, will allow the scientific community to discover and characterize complex behavioral phenotypes to understand brain function better.
理解小鼠产生的丰富行为数据对于解读健康和患病大脑的功能至关重要。然而,目前的情况是缺乏有效、经济且易于使用的方法来获取此类数据,尤其是在同时使用多个摄像头时。我们开发了REVEALS(啮齿动物行为多摄像头实验室采集系统),这是一个用Python编写的图形用户界面(GUI),用于通过常用的USB3摄像头获取啮齿动物的行为数据。REVEALS允许用户方便地控制同时从一个或多个摄像头进行记录,同时简化数据采集过程,使研究人员能够高效地收集和分析大型数据集。我们将这个软件包作为一个独立的开源框架发布,供研究人员根据自己的需求使用和修改。我们描述了GUI实现的细节,包括摄像头控制软件和视频录制功能。我们通过在物体和社交互动实验中使用DeepLabCut姿态估计来验证GUI在捕捉和分析啮齿动物行为方面的稳定性、可靠性和准确性。REVEALS还可以集成到其他自定义管道中,以分析复杂行为,如MoSeq。总之,REVEALS提供了一个从一个或多个角度收集行为数据的接口,与深度学习算法相结合,将使科学界能够发现和表征复杂的行为表型,从而更好地理解大脑功能。