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通过激发态对胞嘧啶互变异构的实验与理论研究。

Experimental and theoretical study of the cytosine tautomerism through excited states.

作者信息

Cherneva Tsvetina D, Todorova Mina M, Bakalska Rumyana I, Shterev Ivan G, Horkel Ernst, Delchev Vassil B

机构信息

Faculty of Chemistry, University of Plovdiv, Tzar Assen 24 Str, 4000, Plovdiv, Bulgaria.

Department of Inorganic and Physical Chemistry, University of Food Technologies, 4002, Plovdiv, Bulgaria.

出版信息

J Mol Model. 2023 Sep 4;29(10):303. doi: 10.1007/s00894-023-05707-0.

Abstract

CONTEXT

The irradiation of water solution of cytosine with UV light (λ = 254 nm) shows oxo-hydroxy tautomerism with a rate constant of 6.297 × 10 min. The order of the reaction implies a tautomeric conversion. After removing the UV light source, we observed a dark reaction with a rate constant of 1.473 × 10 min which leads to a restoration of the initial tautomer as before the irradiation. The mechanism of oxo-hydroxy tautomerism of cytosine in water solution was studied in the excited state. It was found that the transformations occur along the πσ* excited-state reaction paths which link the Franck-Condon geometries of the tautomers and the conical intersections S/S connected with the H-detachment processes of the corresponding bonds. Furthermore, we established that the conical intersections S/S are also mutually accessible along the πσ* excited-state reaction paths.

METHODS

The ground-state equilibrium geometries were optimized at the B3LYP/aug-cc-pVDZ level of theory in water environment according to PCM as well as at the CC2/aug-cc-pVDZ level in the gas phase. The TD B3LYP and CC2 methods were applied for the study of the excited states. The tautomerization mechanisms were studied with the use of the linear interpolation in internal coordinates approach using the optimized geometries of tautomers minima and conical intersections S/S at the CASSCF(6,6)/6-31G* level. All calculations were performed with the GAUSSIAN 16 commercial software.

摘要

背景

用紫外线(λ = 254 nm)照射胞嘧啶水溶液时,会显示出氧代 - 羟基互变异构,速率常数为6.297×10⁻³ min⁻¹。反应级数表明存在互变异构转化。移除紫外线光源后,我们观察到一个暗反应,速率常数为1.473×10⁻³ min⁻¹,该反应导致初始互变异构体恢复到照射前的状态。研究了胞嘧啶在水溶液中处于激发态时的氧代 - 羟基互变异构机理。发现这些转化沿着πσ激发态反应路径发生,这些路径连接了互变异构体的弗兰克 - 康登几何构型以及与相应键的H - 脱离过程相关的锥形交叉点S/S。此外,我们还确定锥形交叉点S/S沿着πσ激发态反应路径也是相互可达的。

方法

根据PCM在水环境中于B3LYP/aug - cc - pVDZ理论水平优化基态平衡几何构型,并在气相中于CC2/aug - cc - pVDZ水平进行优化。应用TD B3LYP和CC2方法研究激发态。使用内坐标线性插值方法,利用在CASSCF(6,6)/6 - 31G*水平下互变异构体极小值和锥形交叉点S/S的优化几何构型来研究互变异构机理。所有计算均使用GAUSSIAN 16商业软件进行。

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