Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, UK.
Currently based at Epoch Biodesign, Oxford, UK.
ISME J. 2023 Nov;17(11):1931-1939. doi: 10.1038/s41396-023-01503-z. Epub 2023 Sep 4.
Once acquired, hypermutation is unrelenting, and in the long-term, leads to impaired fitness due to its cumulative impact on the genome. This raises the question of why hypermutators arise so frequently in microbial ecosystems. In this work, we explore this problem by examining how the transient acquisition of hypermutability affects inter- and intra-species competitiveness, and the response to environmental insults such as antibiotic challenge. We do this by engineering Pseudomonas aeruginosa to allow the expression of an important mismatch repair gene, mutS, to be experimentally controlled over a wide dynamic range. We show that high levels of mutS expression induce genomic stasis (hypomutation), whereas lower levels of induction lead to progressively higher rates of mutation. Whole-genome sequence analyses confirmed that the mutational spectrum of the inducible hypermutator is similar to the distinctive profile associated with mutS mutants obtained from the airways of people with cystic fibrosis (CF). The acquisition of hypermutability conferred a distinct temporal fitness advantage over the wild-type P. aeruginosa progenitor strain, in both the presence and the absence of an antibiotic selection pressure. However, over a similar time-scale, acquisition of hypermutability had little impact on the population dynamics of P. aeruginosa when grown in the presence of a competing species (Staphylococcus aureus). These data indicate that in the short term, acquired hypermutability primarily confers a competitive intra-species fitness advantage.
一旦获得,超突变就会持续不断,并且由于其对基因组的累积影响,长期来看会导致适应性降低。这就提出了一个问题,即在微生物生态系统中,为什么超突变体如此频繁地出现。在这项工作中,我们通过研究瞬态获得超突变性如何影响种间和种内竞争力,以及对环境胁迫(如抗生素挑战)的反应,来探讨这个问题。我们通过工程化铜绿假单胞菌来实现这一点,使重要的错配修复基因 mutS 的表达可以在很宽的动态范围内进行实验控制。我们表明,高水平的 mutS 表达诱导基因组静止(低突变),而较低水平的诱导则导致突变率逐渐升高。全基因组序列分析证实,诱导超突变体的突变谱与从囊性纤维化(CF)患者气道中获得的 mutS 突变体的独特特征相似。与野生型铜绿假单胞菌亲本菌株相比,超突变体在存在和不存在抗生素选择压力的情况下,都具有明显的时间适应性优势。然而,在相似的时间尺度内,当在竞争物种(金黄色葡萄球菌)存在的情况下生长时,超突变体的获得对铜绿假单胞菌的种群动态几乎没有影响。这些数据表明,在短期内,获得的超突变主要赋予了种内竞争的适应性优势。