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TP53 及其调控基因作为皮肤黑色素瘤的预后指标

TP53 and its Regulatory Genes as Prognosis of Cutaneous Melanoma.

作者信息

Khan Safir Ullah, Ullah Zahid, Shaukat Hadia, Unab Sheeza, Jannat Saba, Ali Waqar, Ali Amir, Irfan Muhammad, Khan Muhammad Fiaz, Cervantes-Villagrana Rodolfo Daniel

机构信息

Department of Cell Biology, Center for Research and Advanced Studies, National Polytechnic Institute, Mexico City, Mexico.

Department of Software Engineering, Abasyn University Peshawar, Peshawar, Pakistan.

出版信息

Cancer Inform. 2023 Aug 31;22:11769351231177267. doi: 10.1177/11769351231177267. eCollection 2023.

Abstract

The present study was the first comprehensive investigation of genetic mutation and expression levels of the p53 signaling genes in cutaneous melanoma through various genetic databases providing large datasets. The mutational landscape of p53 and its signaling genes was higher than expected, with followed by being the most mutated gene in cutaneous melanoma. Furthermore, the expression analysis showed , , , and were overexpressed, while and were under-expressed in cutaneous melanoma. Overall, TCGA data revealed that among all the other p53 signaling proteins, CDKN2A was significantly higher in both sun and non-sun-exposed healthy tissues than in melanoma. Likewise, MDM4 and TP53BP1 expressions were markedly greater in non-sun-exposed healthy tissues compared to other groups. However, CDKN2B expression was higher in the sun-exposed healthy tissues than in other tissues. In addition, various genes were expressed significantly differently among males and females. In addition, was highly expressed in the SK-MEL-30 skin cancer cell line, whereas, Immune cell type expression analysis revealed that the was highly expressed in naïve B-cells. Furthermore, all six genes were significantly overexpressed in extraordinarily overweight or obese tumor tissues compared to healthy tissues. expression and tumor stage were closely related. There were differences in gene expression across patient age groups and positive nodal status. showed a positive correlation with B cells, with CD8+ cells, macrophages and neutrophils, and with neutrophils. had a non-significant correlation with all six types of immune cells. However, was positively correlated with all five types of immune cells except B cells. Only , and had a role in cutaneous melanoma-specific tumor immunity. All TP53 and its regulating genes may be predictive for prognosis. The results of the present study need to be validated through future screening, in vivo, and in vitro studies.

摘要

本研究首次通过提供大量数据集的各种基因数据库,对皮肤黑色素瘤中p53信号基因的基因突变和表达水平进行了全面调查。p53及其信号基因的突变图谱高于预期,其中 其次是 是皮肤黑色素瘤中突变最多的基因。此外,表达分析表明, 、 、 和 在皮肤黑色素瘤中过表达,而 和 在皮肤黑色素瘤中低表达。总体而言,TCGA数据显示,在所有其他p53信号蛋白中,CDKN2A在阳光照射和未照射的健康组织中均显著高于黑色素瘤。同样,与其他组相比,MDM4和TP53BP1在未暴露于阳光的健康组织中的表达明显更高。然而,CDKN2B在暴露于阳光的健康组织中的表达高于其他组织。此外,不同基因在男性和女性中的表达存在显著差异。此外, 在SK-MEL-30皮肤癌细胞系中高表达,而免疫细胞类型表达分析显示, 在幼稚B细胞中高表达。此外,与健康组织相比,所有六个基因在极度超重或肥胖的肿瘤组织中均显著过表达。 表达与肿瘤分期密切相关。不同患者年龄组和阳性淋巴结状态的基因表达存在差异。 与B细胞呈正相关, 与CD8 +细胞、巨噬细胞和中性粒细胞呈正相关, 与中性粒细胞呈正相关。 与所有六种免疫细胞的相关性不显著。然而, 与除B细胞外的所有五种免疫细胞呈正相关。只有 、 和 在皮肤黑色素瘤特异性肿瘤免疫中起作用。所有TP53及其调控基因可能对预后具有预测性。本研究结果需要通过未来的筛查、体内和体外研究进行验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/990d/10475268/dd6f8fa44109/10.1177_11769351231177267-fig1.jpg

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