白尾鹿ACE2与所有值得关注的SARS-CoV-2变体高亲和力识别的结构基础。

Structural basis of white-tailed deer, , ACE2 recognizing all the SARS-CoV-2 variants of concern with high affinity.

作者信息

Han Pu, Meng Yumin, Zhang Di, Xu Zepeng, Li Zhiyuan, Pan Xiaoqian, Zhao Zhennan, Li Linjie, Tang Lingfeng, Qi Jianxun, Liu Kefang, Gao George F

机构信息

CAS Key Laboratory of Pathogen Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences (CAS) , Beijing, China.

University of Chinese Academy of Sciences , Beijing, China.

出版信息

J Virol. 2023 Sep 28;97(9):e0050523. doi: 10.1128/jvi.00505-23. Epub 2023 Sep 7.

Abstract

SARS-CoV-2 has been expanding its host range, among which the white-tailed deer (WTD), became the first wildlife species infected on a large scale and might serve as a host reservoir for variants of concern (VOCs) in case no longer circulating in humans. In this study, we comprehensively assessed the binding of the WTD angiotensin-converting enzyme 2 (ACE2) receptor to the spike (S) receptor-binding domains (RBDs) from the SARS-CoV-2 prototype (PT) strain and multiple variants. We found that WTD ACE2 could be broadly recognized by all of the tested RBDs. We further determined the complex structures of WTD ACE2 with PT, Omicron BA.1, and BA.4/5 S trimer. Detailed structural comparison revealed the important roles of RBD residues on 486, 498, and 501 sites for WTD ACE2 binding. This study deepens our understanding of the interspecies transmission mechanisms of SARS-CoV-2 and further addresses the importance of constant monitoring on SARS-CoV-2 infections in wild animals. IMPORTANCE Even if we manage to eliminate the virus among humans, it will still circulate among wildlife and continuously be transmitted back to humans. A recent study indicated that WTD may serve as reservoir for nearly extinct SARS-CoV-2 strains. Therefore, it is critical to evaluate the binding abilities of SARS-CoV-2 variants to the WTD ACE2 receptor and elucidate the molecular mechanisms of binding of the RBDs to assess the risk of spillback events.

摘要

严重急性呼吸综合征冠状病毒2(SARS-CoV-2)一直在扩大其宿主范围,其中白尾鹿成为首个被大规模感染的野生动物物种,并且在不再在人类中传播的情况下,可能成为值得关注的变异株(VOCs)的宿主库。在本研究中,我们全面评估了白尾鹿血管紧张素转换酶2(ACE2)受体与SARS-CoV-2原型(PT)毒株及多个变异株的刺突(S)受体结合域(RBD)的结合情况。我们发现,所有测试的RBD均可广泛识别白尾鹿ACE2。我们进一步确定了白尾鹿ACE2与PT、奥密克戎BA.1和BA.4/5 S三聚体的复合物结构。详细的结构比较揭示了RBD中486、498和501位点的残基在白尾鹿ACE2结合中的重要作用。本研究加深了我们对SARS-CoV-2种间传播机制的理解,并进一步强调了持续监测野生动物中SARS-CoV-2感染情况的重要性。重要性即使我们成功在人类中消灭了该病毒,它仍会在野生动物中传播并持续传播回人类。最近一项研究表明,白尾鹿可能是近乎灭绝的SARS-CoV-2毒株的宿主库。因此,评估SARS-CoV-2变异株与白尾鹿ACE2受体的结合能力并阐明RBD结合的分子机制以评估病毒反向传播事件的风险至关重要。

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