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一个中国人家族中X连锁隐性迟发性常染色体脊柱骨骺发育不良相关基因的新型无义变异c.91A>T的功能分析

Functional analysis of a novel nonsense variant c.91A>T of the gene in a Chinese family with X-linked recessive autosomal spondyloepiphyseal dysplasia tarda.

作者信息

Lou Guiyu, Zhao Yuanyin, Zhao Huiru, Zhang Yuwei, Hao Bingtao, Qin Litao, Liu Hongyan, Liao Shixiu

机构信息

Henan Provincial People's Hospital, Medical Genetics Institute of Henan Province, Henan Provincial Key Laboratory of Genetic Diseases and Functional Genomics, People's Hospital of Zhengzhou University, Zhengzhou, China.

Department of Biochemistry and Molecular Biology, College of Basic Medical Science, Army Medical University, Chongqing, China.

出版信息

Front Genet. 2023 Aug 25;14:1216592. doi: 10.3389/fgene.2023.1216592. eCollection 2023.

DOI:10.3389/fgene.2023.1216592
PMID:37693308
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10492639/
Abstract

Spondyloepiphyseal dysplasia tarda (SEDT) is a condition involving late-onset, X-linked recessive skeletal dysplasia caused by mutations in the gene. In this paper, we identified a novel nonsense variant in a SEDT pedigree and analyzed the function of the variant in an attempt to explain the new pathogenesis of the TRAPPC2 protein in SEDT. Briefly, DNA and RNA samples from the peripheral blood of SEDT individuals were prepared. The causative variant in the Chinese SEDT family was identified by clinic whole-exome sequencing analysis. Then, we observed the mRNA expression of in patients and the mutant TRAPPC2 level and analyzed the protein stability and subcellular distribution by cell fluorescence and Western blotting. We also investigated the effect of knockdown on the expression and secretion of COL2A1 in SW1353 cells or primary human chondrocytes. Herein, we found a nonsense variant, c.91A>T, of the gene in the pedigree. mRNA expression levels were significantly decreased in the available peripheral blood cell samples of two affected patients. An study showed that the mutant plasmid exhibited significantly lower mRNA and protein of , and the mutant protein changed its membrane distribution. knockdown resulted in decreased expression and collagen II secretions. Our data indicate that the novel nonsense variant, c.91A>T, of the gene is the cause of SEDT in this pedigree. The variant results in a lowered expression of TRAPPC2 and then affects the expression and collagen II secretions, which may explain the mechanism of loss of function of the variant.

摘要

迟发性脊椎骨骺发育不良(SEDT)是一种涉及迟发性、X连锁隐性骨骼发育不良的疾病,由该基因的突变引起。在本文中,我们在一个SEDT家系中鉴定出一种新的无义变异,并分析了该变异的功能,试图解释TRAPPC2蛋白在SEDT中的新发病机制。简要地说,制备了SEDT个体外周血的DNA和RNA样本。通过临床全外显子测序分析确定了中国SEDT家系中的致病变异。然后,我们观察了患者中该基因的mRNA表达以及突变型TRAPPC2水平,并通过细胞荧光和蛋白质印迹分析了蛋白质稳定性和亚细胞分布。我们还研究了该基因敲低对SW1353细胞或原代人软骨细胞中COL2A1表达和分泌的影响。在此,我们在该家系中发现了该基因的一个无义变异c.91A>T。在两名受影响患者可用的外周血细胞样本中,该基因的mRNA表达水平显著降低。一项研究表明,突变体质粒的该基因mRNA和蛋白质水平显著降低,且突变蛋白的膜分布发生了变化。该基因敲低导致该基因表达和胶原蛋白II分泌减少。我们的数据表明,该基因的新无义变异c.91A>T是该家系中SEDT的病因。该变异导致TRAPPC2表达降低,进而影响该基因表达和胶原蛋白II分泌,这可能解释了该变异功能丧失的机制。

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A novel nonsense mutation in the sedlin gene (SEDL) causes severe spondyloepiphyseal dysplasia tarda in a five-generation Chinese pedigree.sedlin基因(SEDL)中的一种新型无义突变在一个五代中国家系中导致严重的迟发性脊柱骨骺发育不良。
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本文引用的文献

1
Novel loss-of-function variants of TRAPPC2 manifesting X-linked spondyloepiphyseal dysplasia tarda: report of two cases.表现为X连锁迟发性脊椎骨骺发育不良的TRAPPC2新型功能丧失变异体:两例报告。
BMC Med Genet. 2019 May 3;20(1):70. doi: 10.1186/s12881-019-0802-2.
2
A familial case of spondyloepiphyseal dysplasia tarda caused by a novel splice site mutation in .一例由……中一个新的剪接位点突变引起的迟发性脊椎骨骺发育不良的家族病例。 (你提供的原文不完整,“in”后面缺少具体基因等相关内容)
Clin Pediatr Endocrinol. 2018;27(3):193-196. doi: 10.1297/cpe.27.193. Epub 2018 Jul 31.
3
The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies.
人类基因突变数据库:致力于打造一个全面的遗传性突变数据仓库,服务于医学研究、基因诊断及新一代测序研究。
Hum Genet. 2017 Jun;136(6):665-677. doi: 10.1007/s00439-017-1779-6. Epub 2017 Mar 27.
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In sickness and in health: the role of TRAPP and associated proteins in disease.无论疾病还是健康:TRAPP及相关蛋白在疾病中的作用。
Traffic. 2014 Aug;15(8):803-18. doi: 10.1111/tra.12183. Epub 2014 Jul 1.
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A novel nonsense mutation in the sedlin gene (SEDL) causes severe spondyloepiphyseal dysplasia tarda in a five-generation Chinese pedigree.sedlin基因(SEDL)中的一种新型无义突变在一个五代中国家系中导致严重的迟发性脊柱骨骺发育不良。
Genet Mol Res. 2014 Apr 29;13(2):3362-70. doi: 10.4238/2014.April.29.15.
6
Sedlin controls the ER export of procollagen by regulating the Sar1 cycle.Sedlin通过调节Sar1循环来控制前胶原的内质网输出。
Science. 2012 Sep 28;337(6102):1668-72. doi: 10.1126/science.1224947.
7
SEDLIN forms homodimers: characterisation of SEDLIN mutations and their interactions with transcription factors MBP1, PITX1 and SF1.SEDLIN 形成同源二聚体:SEDLIN 突变的特征及其与转录因子 MBP1、PITX1 和 SF1 的相互作用。
PLoS One. 2010 May 14;5(5):e10646. doi: 10.1371/journal.pone.0010646.
8
Biochemical consequences of sedlin mutations that cause spondyloepiphyseal dysplasia tarda.导致迟发性脊椎骨骺发育不良的Sedlin基因突变的生化后果。
Biochem J. 2009 Sep 25;423(2):233-42. doi: 10.1042/BJ20090541.
9
Spondyloepiphyseal dysplasia tarda (SEDL, MIM #313400).迟发性脊椎骨骺发育不良(SEDL,MIM编号#313400)。
Eur J Hum Genet. 2003 Sep;11(9):639-42. doi: 10.1038/sj.ejhg.5201025.
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Interaction of Sedlin with chloride intracellular channel proteins.
FEBS Lett. 2003 Apr 10;540(1-3):77-80. doi: 10.1016/s0014-5793(03)00228-x.