Department of Chemistry, East Carolina University, Greenville, North Carolina, USA.
J Biomol Struct Dyn. 2024;42(19):10342-10351. doi: 10.1080/07391102.2023.2256877. Epub 2023 Sep 13.
Ca-dependent membrane-binding by the Annexin A2/p11 heterotetramer (A2t) plays an important role in various biological processes including fibrinogen activation and exocytosis in neuroendocrine cells. Two models where A2t associates with a single membrane surface were generated and used to perform molecular dynamics simulations. The first model mimics initial A2t-membrane binding through both Annexin A2 (A2) subunits of A2t (TS model) while the second model mimics A2t-binding through a single A2 subunit (OS model). Conformational changes were summarized using principal component analysis (PCA), simulation snapshots, and distance plots from the simulations. The full TS model, including the p11 dimer, fully associates with the membrane adopting a stable structure with little conformational variation as evidence by PCA. The unassociated subunits of the OS model moved toward the membrane. The molecular mechanics/Generalized-Born surface area (MMGBSA) method was applied to investigate the energetics of the models. The MMGBSA results demonstrated that R63 of p11 was the primary contributor to the p11-membrane interaction. The TS model results were both consistent with those found in the literature and provide novel insights about the specific residues driving the A2t-membrane interaction. Additionally, it represents the most complete model of A2t on the membrane surface available.Communicated by Ramaswamy H. Sarma.
钙依赖性膜结合由 Annexin A2/p11 异四聚体(A2t)介导,在包括神经内分泌细胞中纤维蛋白原激活和胞吐作用在内的各种生物学过程中发挥重要作用。生成了两种与单个膜表面结合的 A2t 模型,并用于进行分子动力学模拟。第一个模型通过 A2t 的两个 Annexin A2(A2)亚基模拟初始 A2t-膜结合(TS 模型),而第二个模型通过单个 A2 亚基模拟 A2t 结合(OS 模型)。使用主成分分析(PCA)、模拟快照和模拟距离图总结构象变化。包括 p11 二聚体在内的完整 TS 模型完全与膜结合,采用稳定的结构,构象变化很小,这一点通过 PCA 得到证实。OS 模型中未结合的亚基向膜移动。应用分子力学/广义 Born 表面积(MMGBSA)方法研究模型的能量。MMGBSA 结果表明,p11 的 R63 是 p11 与膜相互作用的主要贡献者。TS 模型的结果与文献中的结果一致,并提供了关于驱动 A2t-膜相互作用的特定残基的新见解。此外,它代表了在膜表面上可用的最完整的 A2t 模型。由 Ramaswamy H. Sarma 传达。
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