Department of Chemistry, East Carolina University, Greenville, North Carolina, 27858, USA.
Proteins. 2023 Aug;91(8):1042-1053. doi: 10.1002/prot.26490. Epub 2023 Mar 25.
Annexin A2 (A2) is a member of the Annexin family, which contains Ca -regulated phospholipid-binding proteins. Annexins associate with S100 proteins to form heterotetramers. The A2/S100A10 heterotetramer (A2t) is the most extensively studied of these heterotetramers. It induces membrane microdomain formation, causes membrane budding, and facilitates proliferation of some cancers. In this work, the first molecular dynamics (MD) study on the complete A2t of 868 amino acids was performed. MD trajectories of more than 600 ns each were generated for complete A2t complexes with and without Ca ions. The outward extension of membrane-binding residues A2-K279 and A2-K281 was shown to be inhibited in the absence of Ca as they were captured by Ca -binding residue D322. F-actin binding residue A2-D339 was observed to occupy either an exposed or buried state in the absence of Ca , while it only occupied the buried state in the presence of Ca . The observed motions of the A2t subunits are highly organized with a strongly correlated central region which is negatively correlated with the periphery of the complex. The central region contains the S100A10 (p11) dimer, A2-N, and A2-I, while the periphery contains A2-II, A2-III, and A2-IV. Novel interactions between A2 and p11 were identified. A2 residues outside of A2-N (K80, R77, E82, and R145) had strong interactions with p11. Residue R145 of A2 may have a significant effect on the dynamics of the system, with its interaction resulting in asymmetric motions of A2. The presented results provide novel insights to inform future experimental studies.
膜联蛋白 A2(A2)是膜联蛋白家族的成员,该家族包含 Ca2+调节的磷脂结合蛋白。膜联蛋白与 S100 蛋白结合形成异四聚体。这些异四聚体中研究最广泛的是 A2/S100A10 异四聚体(A2t)。它诱导膜微区形成,引起膜出芽,并促进一些癌症的增殖。在这项工作中,对 868 个氨基酸的完整 A2t 进行了首次分子动力学(MD)研究。分别为具有和不具有 Ca2+的完整 A2t 复合物生成了超过 600ns 的 MD 轨迹。结果表明,在没有 Ca2+的情况下,由于被 Ca2+结合残基 D322捕获,膜结合残基 A2-K279 和 A2-K281 的向外延伸受到抑制。在没有 Ca2+的情况下,F-肌动蛋白结合残基 A2-D339 被观察到占据暴露或埋藏状态,而在存在 Ca2+的情况下,它仅占据埋藏状态。观察到的 A2t 亚基的运动高度组织化,具有强烈相关的中央区域,与复合物的外围呈负相关。中央区域包含 S100A10(p11)二聚体、A2-N 和 A2-I,而外围区域包含 A2-II、A2-III 和 A2-IV。鉴定了 A2 与 p11 之间的新相互作用。A2 残基(A2-N 以外的 K80、R77、E82 和 R145)与 p11 具有强烈的相互作用。A2 的残基 R145 可能对系统的动力学有重大影响,其相互作用导致 A2 的不对称运动。所提出的结果为未来的实验研究提供了新的见解。