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脑半球差异,一种用于通过氟代脱氧葡萄糖正电子发射断层扫描(FDG PET)预测α-突触核蛋白病的自监督学习方法。

Brain Hemisphere Dissimilarity, a Self-Supervised Learning Approach for alpha-synucleinopathies prediction with FDG PET.

作者信息

Tripathi S, Mattioli P, Liguori C, Chiaravalloti A, Arnaldi D, Giancardo L

机构信息

School of Biomedical Informatics, University of Texas Health Center at Houston, TX, USA.

Department of Neuroscience (DINOGMI), University of Genoa, Genoa, Italy.

出版信息

Proc IEEE Int Symp Biomed Imaging. 2023 Apr;2023. doi: 10.1109/isbi53787.2023.10230560. Epub 2023 Sep 1.

DOI:10.1109/isbi53787.2023.10230560
PMID:37706192
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10496490/
Abstract

Idiopathic Rem sleep Behavior Disorder (iRBD) is a significant biomarker for the development of alpha-synucleinopathies, such as Parkinson's disease (PD) or Dementia with Lewy bodies (DLB). Methods to identify patterns in iRBD patients can help in the prediction of the future conversion to these diseases during the long prodromal phase when symptoms are non-specific. These methods are essential for disease management and clinical trial recruitment. Brain PET scans with 18F-FDG PET radiotracers have recently shown promise, however, the scarcity of longitudinal data and PD/DLB conversion information makes the use of representation learning approaches such as deep convolutional networks not feasible if trained in a supervised manner. In this work, we propose a self-supervised learning strategy to learn features by comparing the brain hemispheres of iRBD non-convertor subjects, which allows for pre-training a convolutional network on a small data regimen. We introduce a loss function called hemisphere dissimilarity loss (HDL), which extends the Barlow Twins loss, that promotes the creation of invariant and non-redundant features for brain hemispheres of the same subject, and the opposite for hemispheres of different subjects. This loss enables the pre-training of a network without any information about the disease, which is then used to generate full brain feature vectors that are fine-tuned to two downstream tasks: follow-up conversion, and the type of conversion (PD or DLB) using baseline 18F-FDG PET. In our results, we find that the HDL outperforms the variational autoencoder with different forms of inputs.

摘要

特发性快速眼动睡眠行为障碍(iRBD)是α-突触核蛋白病(如帕金森病(PD)或路易体痴呆(DLB))发展的重要生物标志物。识别iRBD患者模式的方法有助于在症状不具特异性的漫长前驱期预测未来向这些疾病的转化。这些方法对于疾病管理和临床试验招募至关重要。最近,使用18F-FDG PET放射性示踪剂的脑PET扫描显示出前景,然而,纵向数据和PD/DLB转化信息的稀缺使得如果以监督方式训练,使用深度卷积网络等表征学习方法变得不可行。在这项工作中,我们提出了一种自监督学习策略,通过比较iRBD未转化者的脑半球来学习特征,这允许在小数据方案上对卷积网络进行预训练。我们引入了一种称为半球差异损失(HDL)的损失函数,它扩展了巴洛双胞胎损失,促进为同一受试者的脑半球创建不变且非冗余的特征,而对于不同受试者的脑半球则相反。这种损失使得能够在没有任何疾病信息的情况下对网络进行预训练,然后将其用于生成全脑特征向量,这些特征向量被微调至两个下游任务:随访转化以及使用基线18F-FDG PET的转化类型(PD或DLB)。在我们的结果中,我们发现HDL在不同形式输入下优于变分自编码器。

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本文引用的文献

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A 3D deep learning model to predict the diagnosis of dementia with Lewy bodies, Alzheimer's disease, and mild cognitive impairment using brain 18F-FDG PET.使用脑 18F-FDG PET 预测路易体痴呆、阿尔茨海默病和轻度认知障碍的三维深度学习模型。
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REM sleep behavior disorder (RBD).快速眼动睡眠行为障碍(RBD)。
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The Emerging Evidence of the Parkinson Pandemic.
帕金森病大流行的新证据。
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Machine learning identified an Alzheimer's disease-related FDG-PET pattern which is also expressed in Lewy body dementia and Parkinson's disease dementia.机器学习识别出一种与阿尔茨海默病相关的 FDG-PET 模式,这种模式也存在于路易体痴呆和帕金森病痴呆中。
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