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不稳定的 SEPT14-SEPT7 卷曲螺旋的 X 射线结构揭示了十一肽区对于异二聚化至关重要。

X-ray structure of the metastable SEPT14-SEPT7 coiled coil reveals a hendecad region crucial for heterodimerization.

机构信息

São Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone 1100, São Carlos, SP 13563-120, Brazil.

School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, United Kingdom.

出版信息

Acta Crystallogr D Struct Biol. 2023 Oct 1;79(Pt 10):881-894. doi: 10.1107/S2059798323006514. Epub 2023 Sep 15.

Abstract

Septins are membrane-associated, GTP-binding proteins that are present in most eukaryotes. They polymerize to play important roles as scaffolds and/or diffusion barriers as part of the cytoskeleton. α-Helical coiled-coil domains are believed to contribute to septin assembly, and those observed in both human SEPT6 and SEPT8 form antiparallel homodimers. These are not compatible with their parallel heterodimeric organization expected from the current model for protofilament assembly, but they could explain the interfilament cross-bridges observed by microscopy. Here, the first structure of a heterodimeric septin coiled coil is presented, that between SEPT14 and SEPT7; the former is a SEPT6/SEPT8 homolog. This new structure is parallel, with two long helices that are axially shifted by a full helical turn with reference to their sequence alignment. The structure also has unusual knobs-into-holes packing of side chains. Both standard seven-residue (heptad) and the less common 11-residue (hendecad) repeats are present, creating two distinct regions with opposite supercoiling, which gives rise to an overall straight coiled coil. Part of the hendecad region is required for heterodimerization and therefore may be crucial for selective septin recognition. These unconventional sequences and structural features produce a metastable heterocomplex that nonetheless has enough specificity to promote correct protofilament assembly. For instance, the lack of supercoiling may facilitate unzipping and transitioning to the antiparallel homodimeric state.

摘要

septins 是一种膜相关的 GTP 结合蛋白,存在于大多数真核生物中。它们聚合在一起作为支架和/或扩散障碍,作为细胞骨架的一部分发挥重要作用。α-螺旋卷曲螺旋结构域被认为有助于 septin 的组装,在人类 SEPT6 和 SEPT8 中观察到的结构域形成反平行同源二聚体。这些与当前原丝组装模型所预期的平行异源二聚体组织不兼容,但它们可以解释显微镜观察到的丝状交叉桥。在这里,提出了第一个异源二聚体 septin 卷曲螺旋的结构,即 SEPT14 和 SEPT7 之间的结构;前者是 SEPT6/SEPT8 的同源物。这个新结构是平行的,有两个长的螺旋,相对于它们的序列比对,轴向旋转了一个完整的螺旋。该结构还具有不寻常的侧链“旋钮入孔”包装。标准的七残基(七肽)和较少见的十一残基(十一肽)重复序列都存在,形成两个具有相反超螺旋的独特区域,从而产生一个整体的直卷曲螺旋。 hendecad 区域的一部分是异源二聚化所必需的,因此可能对选择性 septin 识别至关重要。这些非常规的序列和结构特征产生了一种亚稳态的异源复合物,但它具有足够的特异性来促进正确的原丝组装。例如,缺乏超螺旋可能有助于解拉链并过渡到反平行同源二聚体状态。

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本文引用的文献

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An atomic model for the human septin hexamer by cryo-EM.通过 cryo-EM 构建的人类六聚体 septin 原子模型。
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