Department of Biomedical Sciences, Sri Ramachandra Institute of Higher Education and Research, Chennai, India.
Department of Bioinformatics, Sri Ramachandra Institute of Higher Education and Research, Chennai, India.
J Biomol Struct Dyn. 2024;42(20):10800-10823. doi: 10.1080/07391102.2023.2258993. Epub 2023 Sep 21.
Colorectal cancer (CRC) burden is progressively increasing in young population due to dietary and lifestyle pattern. Advanced glycation end products (AGEs), one of the dietary compounds, form complex aggregates with proteins, lipids, and nucleic acids distorting their structure and function. AGE's pro-tumorigenic role is mediated through the receptor for AGEs (RAGE) triggering an array of signaling pathways. The current study aimed to target AGE-RAGE axis signaling proteins and kinases at multiple levels with calcitriol (CAL) and resveratrol (RES) through analysis using molecular docking (MD), molecular dynamic simulation(MDS), MM-PBSA analysis, and study. analysis of CAL and RES showed significant binding affinity toward RAGE and its signaling proteins such as NF-kB, PI3K/AKT, ERK1/2, and PKC compared to its reference inhibitors through better hydrogen, hydrophobic, pi-pi stacking interactions. MD and MDS studies have revealed stable and compact protein-ligand complexes. Binding free energies of protein-ligand complex were estimated using MM/PBSA analysis thatprovided an assessment of overall interacting free energies of complexes and revealed the presence of low binding energy within the active site. Furthermore, in the study, methylglyoxal (MG), an AGE-precursor showed a proliferative effect on HCT116, however, CAL and RES showed an inhibitory effect against MG induced effect with an IC50 value of 51 nM and 110 µM respectively. Thus, the study suggests the possible target binding sites of AGE-RAGE signaling proteins and kinases with CAL and RES, thereby exploiting it for developing CAL with RES as adjuvant therapy along with chemo drug for CRC.Communicated by Ramaswamy H. Sarma.
结直肠癌(CRC)的负担在年轻人中由于饮食和生活方式的原因而逐渐增加。晚期糖基化终产物(AGEs)是饮食化合物之一,与蛋白质、脂质和核酸形成复杂的聚集体,使其结构和功能发生扭曲。AGE 的促肿瘤作用是通过受体 AGE(RAGE)介导的,触发一系列信号通路。本研究旨在通过分析用钙三醇(CAL)和白藜芦醇(RES)靶向 AGE-RAGE 轴信号蛋白和激酶在多个水平上,使用分子对接(MD)、分子动力学模拟(MDS)、MM-PBSA 分析和实验研究。通过更好的氢键、疏水性、π-π堆积相互作用,CAL 和 RES 对 RAGE 及其信号蛋白(如 NF-κB、PI3K/AKT、ERK1/2 和 PKC)的结合亲和力明显高于其参考抑制剂。MD 和 MDS 研究表明,蛋白质-配体复合物稳定且紧凑。使用 MM/PBSA 分析估算了蛋白质-配体复合物的结合自由能,该分析提供了对复合物整体相互作用自由能的评估,并揭示了活性位点内存在低结合能。此外,在实验研究中,甲基乙二醛(MG),一种 AGE 前体,对 HCT116 表现出增殖作用,然而,CAL 和 RES 对 MG 诱导的作用表现出抑制作用,IC50 值分别为 51 nM 和 110 μM。因此,该研究表明 CAL 和 RES 可能与 AGE-RAGE 信号蛋白和激酶结合的靶位,从而利用其开发 CAL 与 RES 作为 CRC 化疗药物的辅助治疗。由 Ramaswamy H. Sarma 交流。