State Key Laboratory of Natural Medicines, School of Traditional Chinese Pharmacy, China Pharmaceutical University, Nanjing, 211198, China.
Department of Chemistry, University of Florida, Gainesville, FL-32611, USA.
Angew Chem Int Ed Engl. 2023 Nov 6;62(45):e202312490. doi: 10.1002/anie.202312490. Epub 2023 Oct 6.
Terpene cyclization, one of the most complex chemical reactions in nature, is generally catalyzed by two classes of terpene cyclases (TCs). Cytochrome P450s that act as unexpected TC-like enzymes are known but are very rare. In this study, we genome-mined a cryptic bacterial terpenoid gene cluster, named ari, from the thermophilic actinomycete strain Amycolatopsis arida. By employing a heterologous production system, we isolated and characterized three highly oxidized eunicellane derived diterpenoids, aridacins A-C (1-3), that possess a 6/7/5-fused tricyclic scaffold. In vivo and in vitro experiments systematically established a noncanonical two-step biosynthetic pathway for diterpene skeleton formation. First, a class I TC (AriE) cyclizes geranylgeranyl diphosphate (GGPP) into a 6/10-fused bicyclic cis-eunicellane skeleton. Next, a cytochrome P450 (AriF) catalyzes cyclization of the eunicellane skeleton into the 6/7/5-fused tricyclic scaffold through C2-C6 bond formation. Based on the results of quantum chemical computations, hydrogen abstraction followed by electron transfer coupled to barrierless carbocation ring closure is shown to be a viable mechanism for AriF-mediated cyclization. The biosynthetic logic of skeleton construction in the aridacins is unprecedented, expanding the catalytic capacity and diversity of P450s and setting the stage to investigate the inherent principles of carbocation generation by P450s in the biosynthesis of terpenoids.
萜类化合物的环化反应是自然界中最复杂的化学反应之一,通常由两类萜烯环化酶(TCs)催化。虽然已知细胞色素 P450 可以作为意想不到的 TC 样酶发挥作用,但非常罕见。在这项研究中,我们从嗜热放线菌 Amycolatopsis arida 中基因组挖掘了一个隐匿的细菌萜类基因簇,命名为 ari。通过采用异源生产系统,我们分离并鉴定了三种高度氧化的 eunicellane 衍生的二萜类化合物,即 aridacins A-C(1-3),它们具有 6/7/5 稠合的三环骨架。体内和体外实验系统地建立了二萜骨架形成的非典型两步生物合成途径。首先,I 类 TC(AriE)将香叶基香叶基二磷酸(GGPP)环化成 6/10 稠合的双环 cis-eunicellane 骨架。接下来,细胞色素 P450(AriF)通过 C2-C6 键形成催化 eunicellane 骨架环化成 6/7/5 稠合的三环支架。基于量子化学计算的结果,显示氢提取随后与电子转移偶联到无势垒碳正离子环闭是 AriF 介导的环化的可行机制。在 aridacins 中,骨架构建的生物合成逻辑是前所未有的,扩展了 P450 的催化能力和多样性,并为研究 P450 在萜类生物合成中产生碳正离子的固有原理奠定了基础。