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利用元素周期表描述符和机器学习方法预测吸附在纳米二氧化钛上的重金属的细胞毒性

Prediction of cytotoxicity of heavy metals adsorbed on nano-TiO with periodic table descriptors using machine learning approaches.

作者信息

Roy Joyita, Pore Souvik, Roy Kunal

机构信息

Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata, 700032, India.

出版信息

Beilstein J Nanotechnol. 2023 Sep 12;14:939-950. doi: 10.3762/bjnano.14.77. eCollection 2023.

DOI:10.3762/bjnano.14.77
PMID:37736658
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10509545/
Abstract

Nanoparticles with their unique features have attracted researchers over the past decades. Heavy metals, upon release and emission, may interact with different environmental components, which may lead to co-exposure to living organisms. Nanoscale titanium dioxide (nano-TiO) can adsorb heavy metals. The current idea is that nanoparticles (NPs) may act as carriers and facilitate the entry of heavy metals into organisms. Thus, the present study reports nanoscale quantitative structure-activity relationship (nano-QSAR) models, which are based on an ensemble learning approach, for predicting the cytotoxicity of heavy metals adsorbed on nano-TiO to human renal cortex proximal tubule epithelial (HK-2) cells. The ensemble learning approach implements gradient boosting and bagging algorithms; that is, random forest, AdaBoost, Gradient Boost, and Extreme Gradient Boost were constructed and utilized to establish statistically significant relationships between the structural properties of NPs and the cause of cytotoxicity. To demonstrate the predictive ability of the developed nano-QSAR models, simple periodic table descriptors requiring low computational resources were utilized. The nano-QSAR models generated good values (0.99-0.89), values (0.64-0.77), and values (0.99-0.71). Thus, the present work manifests that ML in conjunction with periodic table descriptors can be used to explore the features and predict unknown compounds with similar properties.

摘要

在过去几十年里,具有独特特性的纳米颗粒吸引了研究人员的关注。重金属在释放和排放后,可能会与不同的环境成分相互作用,这可能导致生物体受到共同暴露。纳米级二氧化钛(纳米TiO₂)可以吸附重金属。目前的观点是,纳米颗粒(NPs)可能充当载体,促进重金属进入生物体。因此,本研究报告了基于集成学习方法的纳米级定量构效关系(纳米QSAR)模型,用于预测吸附在纳米TiO₂上的重金属对人肾皮质近端小管上皮(HK - 2)细胞的细胞毒性。集成学习方法实施梯度提升和装袋算法;也就是说,构建并利用随机森林、AdaBoost、梯度提升和极端梯度提升来建立NPs的结构特性与细胞毒性原因之间的统计学显著关系。为了证明所开发的纳米QSAR模型的预测能力,使用了计算资源需求较低的简单元素周期表描述符。纳米QSAR模型产生了良好的R²值(0.99 - 0.89)、Q²值(0.64 - 0.77)和RMSE值(0.99 - 0.71)。因此,目前的工作表明,机器学习与元素周期表描述符相结合可用于探索特征并预测具有相似性质的未知化合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/5817fc55fbf6/Beilstein_J_Nanotechnol-14-939-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/c92ceaf60360/Beilstein_J_Nanotechnol-14-939-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/d4ff70324cf5/Beilstein_J_Nanotechnol-14-939-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/9ec76a50f6d1/Beilstein_J_Nanotechnol-14-939-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/71f65d18d75f/Beilstein_J_Nanotechnol-14-939-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/0810b40dca00/Beilstein_J_Nanotechnol-14-939-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/5817fc55fbf6/Beilstein_J_Nanotechnol-14-939-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/c92ceaf60360/Beilstein_J_Nanotechnol-14-939-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/d4ff70324cf5/Beilstein_J_Nanotechnol-14-939-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/9ec76a50f6d1/Beilstein_J_Nanotechnol-14-939-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/71f65d18d75f/Beilstein_J_Nanotechnol-14-939-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/0810b40dca00/Beilstein_J_Nanotechnol-14-939-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e01f/10509545/5817fc55fbf6/Beilstein_J_Nanotechnol-14-939-g007.jpg

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