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基于综合生物信息学分析的泛癌中NUSAP1的表达谱及基因调控网络

Expression Profile and Gene Regulation Network of NUSAP1 in Pan Cancers Based on Integrated Bioinformatics Analysis.

作者信息

Zhu Xiaodi, Wu Yuting, Liao Liwei, Huang Wenqi, Yuan Lu, Huang Jihong, Zhan Yongzhong, Liu Laiyu

机构信息

Chronic Airways Diseases Laboratory, Department of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, People's Republic of China.

Blood Transfusion Department, Ganzhou Hospital-Nanfang Hospital, Southern Medical University, Ganzhou, Jiangxi, 341000 People's Republic of China.

出版信息

Int J Gen Med. 2023 Sep 18;16:4235-4248. doi: 10.2147/IJGM.S414270. eCollection 2023.

Abstract

BACKGROUND

Nucleolar and spindle-associated protein 1 (NUSAP1) plays key roles in microtubules and chromosomes in normal cells both structurally and functionally. In malignancies, NUSAP1 is frequently dysregulated and mutated. However, the expression profiles and biological functions of NUSAP1 in tumors remain unclear.

METHODS

NUSAP1 expression in BALB/c mice and human normal or tumor tissues was examined using immunohistochemistry. Kaplan-Meier survival analysis was utilized to assess the prognostic significance of NUSAP1 in tumors, and principal component analysis and co-expression analysis were performed to explore the unique roles of NUSAP1. Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were performed with DAVID. The relevance between NUSAP1 and tumor-infiltrating immune cells was investigated using TIMER. A transcriptional regulation network was constructed using data from The Cancer Genome Atlas.

RESULTS

NUSAP1 expression levels in various mice tissues were different. Compared with normal tissues, NUSAP1 was strongly expressed in several human tumor tissues. We believe that NUSAP1 distinctly impacts the prognosis of several cancers and plays various roles in thymoma and testicular germ cell tumors. Further, NUSAP1 expression levels were significantly positively associated with diverse infiltrating levels of immune cells, including B cells, CD4+ and CD8+ T cells, dendritic cells, and macrophages, in thymoma. The expression level of NUSAP1 demonstrated strong relevance with various immune markers in thymoma. Finally, the miR-1236-5p-NUSAP1 and TCF3-NUSAP1 network revealed the tumor-promoting role of NUSAP1 and pertinent underlying mechanisms in human liver hepatocellular carcinoma.

CONCLUSION

NUSAP1 may be regarded as a therapeutic target or potential prognostic biomarker for various cancer types.

摘要

背景

核仁与纺锤体相关蛋白1(NUSAP1)在正常细胞的微管和染色体结构及功能方面发挥关键作用。在恶性肿瘤中,NUSAP1常发生失调和突变。然而,NUSAP1在肿瘤中的表达谱和生物学功能仍不清楚。

方法

采用免疫组织化学法检测BALB/c小鼠以及人类正常或肿瘤组织中NUSAP1的表达。利用Kaplan-Meier生存分析评估NUSAP1在肿瘤中的预后意义,并进行主成分分析和共表达分析以探索NUSAP1的独特作用。使用DAVID进行基因本体论和京都基因与基因组百科全书通路富集分析。利用TIMER研究NUSAP1与肿瘤浸润免疫细胞之间的相关性。使用来自癌症基因组图谱的数据构建转录调控网络。

结果

NUSAP1在各种小鼠组织中的表达水平不同。与正常组织相比,NUSAP1在几种人类肿瘤组织中高表达。我们认为NUSAP1对几种癌症的预后有显著影响,并且在胸腺瘤和睾丸生殖细胞肿瘤中发挥多种作用。此外,在胸腺瘤中,NUSAP1表达水平与包括B细胞、CD4 +和CD8 + T细胞、树突状细胞和巨噬细胞在内的多种免疫细胞浸润水平显著正相关。NUSAP1的表达水平与胸腺瘤中的各种免疫标志物密切相关。最后,miR-1236-5p-NUSAP1和TCF3-NUSAP1网络揭示了NUSAP1在人类肝细胞癌中的促肿瘤作用及相关潜在机制。

结论

NUSAP1可被视为多种癌症类型的治疗靶点或潜在的预后生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a7a3/10516127/edf5a6c79e16/IJGM-16-4235-g0001.jpg

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