Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, United States.
Department of Physics, Cornell University, Ithaca, NY, United States.
Methods Enzymol. 2023;688:1-42. doi: 10.1016/bs.mie.2023.07.007. Epub 2023 Aug 24.
A long-standing goal in X-ray crystallography has been to extract information about the collective motions of proteins from diffuse scattering: the weak, textured signal that is found in the background of diffraction images. In the past few years, the field of macromolecular diffuse scattering has seen dramatic progress, and many of the past challenges in measurement and interpretation are now considered tractable. However, the concept of diffuse scattering is still new to many researchers, and a general set of procedures needed to collect a high-quality dataset has never been described in detail. Here, we provide the first guidelines for performing diffuse scattering experiments, which can be performed at any macromolecular crystallography beamline that supports room-temperature studies with a direct detector. We begin with a brief introduction to the theory of diffuse scattering and then walk the reader through the decision-making processes involved in preparing for and conducting a successful diffuse scattering experiment. Finally, we define quality metrics and describe ways to assess data quality both at the beamline and at home. Data obtained in this way can be processed independently by crystallographic software and diffuse scattering software to produce both a crystal structure, which represents the average atomic coordinates, and a three-dimensional diffuse scattering map that can then be interpreted in terms of models for protein motions.
X 射线晶体学的一个长期目标是从漫散射中提取有关蛋白质集体运动的信息:在衍射图像的背景中发现的微弱、纹理状的信号。在过去的几年中,大分子漫散射领域取得了显著的进展,过去在测量和解释方面的许多挑战现在都被认为是可行的。然而,漫散射的概念对许多研究人员来说仍然是新的,并且从未详细描述过收集高质量数据集所需的一套通用程序。在这里,我们提供了进行漫散射实验的第一个指南,这些实验可以在任何支持室温下使用直接探测器进行研究的大分子晶体学光束线上进行。我们首先简要介绍漫散射的理论,然后引导读者完成准备和成功进行漫散射实验所涉及的决策过程。最后,我们定义质量指标,并描述在光束线和本地评估数据质量的方法。以这种方式获得的数据可以由晶体学软件和漫散射软件独立处理,以生成代表平均原子坐标的晶体结构,以及可以根据蛋白质运动模型进行解释的三维漫散射图。