Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
J Synchrotron Radiat. 2010 Nov;17(6):774-81. doi: 10.1107/S0909049510028566. Epub 2010 Sep 3.
Biological small-angle X-ray scattering (SAXS) provides powerful complementary data for macromolecular crystallography (MX) by defining shape, conformation and assembly in solution. Although SAXS is in principle the highest throughput technique for structural biology, data collection is limited in practice by current data collection software. Here the adaption of beamline control software, historically developed for MX beamlines, for the efficient operation and high-throughput data collection at synchrotron SAXS beamlines is reported. The Blu-Ice GUI and Distributed Control System (DCS) developed in the Macromolecular Crystallography Group at the Stanford Synchrotron Radiation Laboratory has been optimized, extended and enhanced to suit the specific needs of the biological SAXS endstation at the SIBYLS beamline at the Advanced Light Source. The customizations reported here provide a potential route for other SAXS beamlines in need of robust and efficient beamline control software. As a great deal of effort and optimization has gone into crystallographic software, the adaption and extension of crystallographic software may prove to be a general strategy to provide advanced SAXS software for the synchrotron community. In this way effort can be put into optimizing features for SAXS rather than reproducing those that have already been successfully implemented for the crystallographic community.
生物小角 X 射线散射 (SAXS) 通过在溶液中定义形状、构象和组装,为大分子晶体学 (MX) 提供了强大的补充数据。尽管 SAXS 原则上是结构生物学中通量最高的技术,但实际上数据采集受到当前数据采集软件的限制。本文报告了对束线控制软件的改编,该软件历史上是为 MX 束线开发的,用于在同步加速器 SAXS 束线上进行高效操作和高通量数据采集。斯坦福同步辐射实验室大分子晶体学小组开发的 Blu-Ice GUI 和分布式控制系统 (DCS) 已经进行了优化、扩展和增强,以满足 SIBYLS 光束线生物 SAXS 终端的特定需求。这里报告的定制提供了其他需要强大高效束线控制软件的 SAXS 光束线的潜在途径。由于已经投入了大量的努力和优化晶体学软件,晶体学软件的改编和扩展可能被证明是为同步加速器社区提供先进 SAXS 软件的一般策略。通过这种方式,可以投入精力来优化 SAXS 的功能,而不是重复那些已经为晶体学社区成功实现的功能。