Institute of Bioinformatics, International Technology Park, Bangalore, 560066, India.
Manipal Academy of Higher Education, Manipal, 576104, Karnataka, India.
J Hum Genet. 2023 Dec;68(12):859-866. doi: 10.1038/s10038-023-01195-5. Epub 2023 Sep 26.
Spinocerebellar ataxia, autosomal recessive-17 (SCAR17) is a rare hereditary ataxia characterized by ataxic gait, cerebellar signs and occasionally accompanied by intellectual disability and seizures. Pathogenic mutations in the CWF19L1 gene that code for CWF19 like cell cycle control factor 1 cause SCAR17. We report here two unrelated families with the clinical characteristics of global developmental delay, cerebellar ataxia, pyramidal signs, and seizures. Cerebellar atrophy, and T2/FLAIR hypointense transverse pontine stripes were observed in brain imaging. Exome sequencing identified novel homozygous mutations including a splice acceptor site variant c.1375-2 A > G on intron 12 in a male patient and a single nucleotide variant c.452 T > G on exon 5 resulting in a missense variant p.Ile151Ser in the female patient from two unrelated families, respectively. Sanger sequencing confirmed the segregation of these variants in the family members with autosomal recessive inheritance. Transcript analysis of the splice site variant revealed activation of a novel cryptic splice acceptor site on exon 13 resulting in an alternative transcription with a loss of nine nucleotides on exon 13. Translation of this transcript predicted an in-frame deletion of three amino acids p.(459_461del). We also observed a novel exon 13 skipping which results in premature termination of the protein product. Our study expands the phenotype, radiological features, and genotypes known in SCAR17.
常染色体隐性遗传 17 型脊髓小脑共济失调(SCAR17)是一种罕见的遗传性共济失调,其特征为共济失调步态、小脑征,偶尔伴有智力残疾和癫痫。编码 CWF19 样细胞周期控制因子 1 的 CWF19L1 基因突变导致 SCAR17。我们在此报告两例无关联家系,其临床特征为全面发育迟缓、小脑共济失调、锥体系征和癫痫。脑影像学显示小脑萎缩和 T2/FLAIR 低信号横桥条纹。外显子组测序发现了新的纯合突变,包括一名男性患者的 12 号内含子上的剪接受体位点变异 c.1375-2 A > G 和一名女性患者的 5 号外显子上的单核苷酸变异 c.452 T > G,导致外显子 13 上的错义变异 p.Ile151Ser。来自两个无关联家系的这两种变体分别通过 Sanger 测序证实了与常染色体隐性遗传一致的家系成员遗传。剪接受体位点变异的转录分析显示激活了 13 号外显子上的一个新的隐秘剪接受体位点,导致外显子 13 上的 9 个核苷酸缺失,从而产生一个带有框移的转录本。该转录本的翻译预测外显子 13 缺失三个氨基酸 p.(459_461del)。我们还观察到一个新的外显子 13 跳跃,导致蛋白产物提前终止。我们的研究扩展了 SCAR17 已知的表型、影像学特征和基因型。