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转录组学和激素分析为了解奥利弗腋芽生长的调控提供了见解。

Transcriptomic and Hormone Analyses Provide Insight into the Regulation of Axillary Bud Outgrowth of Oliver.

作者信息

Zhang Ying, Du Dandan, Wei Hongling, Xie Shengnan, Tian Xuchen, Yang Jing, Xiao Siqiu, Tang Zhonghua, Li Dewen, Liu Ying

机构信息

College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, China.

Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040, China.

出版信息

Curr Issues Mol Biol. 2023 Sep 7;45(9):7304-7318. doi: 10.3390/cimb45090462.

Abstract

An essential indicator of Oliver () is the axillary bud; the growth and developmental capacity of axillary buds could be used to efficiently determine the structural integrity of branches and plant regeneration. We obtained axillary buds in different positions on the stem, including upper buds (CK), tip buds (T1), and bottom buds (T2), which provided optimal materials for the study of complicated regulatory networks that control bud germination. This study used transcriptomes to analyze the levels of gene expression in three different types of buds, and the results showed that 12,131 differentially expressed genes (DEGs) were discovered via the pairwise comparison of transcriptome data gathered from CK to T2, while the majority of DEGs (44.38%) were mainly found between CK and T1. These DEGs were closely related to plant hormone signal transduction and the amino acid biosynthesis pathway. We also determined changes in endogenous hormone contents during the process of bud germination. Interestingly, except for indole-3-acetic acid (IAA) content, which showed a significant upward trend ( < 0.05) in tip buds on day 4 compared with day 0, the other hormones showed no significant change during the process of germination. Then, the expression patterns of genes involved in IAA biosynthesis and signaling were examined through transcriptome analysis. Furthermore, the expression levels of genes related to IAA biosynthesis and signal transduction were upregulated in tip buds. Particularly, the expression of the IAA degradation gene () was downregulated on day 4, which may support the concept that endogenous IAA promotes bud germination. Based on these data, we propose that IAA synthesis and signal transduction lead to morphological changes in tip buds during the germination process. On this basis, suggestions to improve the efficiency of the production and application of are put forward to provide guidance for future research.

摘要

奥利弗(Oliver)的一个重要指标是腋芽;腋芽的生长和发育能力可用于有效确定枝条的结构完整性和植株再生情况。我们获取了茎上不同位置的腋芽,包括上部芽(CK)、顶芽(T1)和基部芽(T2),这些为研究控制芽萌发的复杂调控网络提供了理想材料。本研究利用转录组分析三种不同类型芽中的基因表达水平,结果显示,通过对从CK到T2收集的转录组数据进行成对比较,发现了12131个差异表达基因(DEG),而大多数DEG(44.38%)主要存在于CK和T1之间。这些DEG与植物激素信号转导和氨基酸生物合成途径密切相关。我们还测定了芽萌发过程中内源激素含量的变化。有趣的是,除了吲哚 - 3 - 乙酸(IAA)含量在第4天与第0天相比在顶芽中呈现显著上升趋势(<0.05)外,其他激素在萌发过程中没有显著变化。然后,通过转录组分析研究了参与IAA生物合成和信号传导的基因的表达模式。此外,与IAA生物合成和信号转导相关的基因在顶芽中的表达水平上调。特别是,IAA降解基因()在第4天表达下调,这可能支持内源IAA促进芽萌发的观点。基于这些数据,我们提出IAA合成和信号转导在萌发过程中导致顶芽形态变化。在此基础上,提出了提高奥利弗生产和应用效率的建议,为未来研究提供指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae34/10528246/2d35a341a11e/cimb-45-00462-g001.jpg

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