Sundermeyer Lea, Folkerts Jan-Gerrit, Lückel Benita, Mack Christina, Baumgart Meike, Bott Michael
IBG-1: Biotechnology, Institute of Bio- and Geosciences, Forschungszentrum Jülich , Jülich, Germany.
Bioeconomy Science Center (BioSC), Forschungszentrum Jülich , Jülich, Germany.
Microbiol Spectr. 2023 Sep 27;11(5):e0266823. doi: 10.1128/spectrum.02668-23.
For many bacterial proteins, specific localizations within the cell have been demonstrated, but enzymes involved in central metabolism are usually considered to be homogenously distributed within the cytoplasm. Here, we provide an example for a spatially defined localization of a unique enzyme complex found in actinobacteria, the hybrid pyruvate/2-oxoglutarate dehydrogenase complex (PDH-ODH). In non-actinobacterial cells, PDH and ODH form separate multienzyme complexes of megadalton size composed of three different subunits, E1, E2, and E3. The actinobacterial PDH-ODH complex is composed of four subunits, AceE (E1p), AceF (E2p), Lpd (E3), and OdhA (E1oE2o). Using fluorescence microscopy, we observed that in , all four subunits are co-localized in distinct spots at the cell poles, and in larger cells, additional spots are present at mid-cell. These results further confirm the existence of the hybrid complex. The unphosporylated OdhI protein, which binds to OdhA and inhibits ODH activity, was co-localized with OdhA at the poles, whereas phosphorylated OdhI, which does not bind OdhA, was distributed in the entire cytoplasm. Isocitrate dehydrogenase and glutamate dehydrogenase, both metabolically linked to ODH, were evenly distributed in the cytoplasm. Based on the available structural data for individual PDH-ODH subunits, a novel supramolecular architecture of the hybrid complex differing from classical PDH and ODH complexes has to be postulated. Our results suggest that localization at the poles or at mid-cell is most likely caused by nucleoid exclusion and results in a spatially organized metabolism in actinobacteria, with consequences yet to be studied. IMPORTANCE Enzymes involved in the central metabolism of bacteria are usually considered to be distributed within the entire cytoplasm. Here, we provide an example for a spatially defined localization of a unique enzyme complex of actinobacteria, the hybrid pyruvate dehydrogenase/2-oxoglutarate dehydrogenase (PDH-ODH) complex composed of four different subunits. Using fusions with mVenus or mCherry and fluorescence microscopy, we show that all four subunits are co-localized in distinct spots at the cell poles, and in larger cells, additional spots were observed at mid-cell. These results clearly support the presence of the hybrid PDH-ODH complex and suggest a similar localization in other actinobacteria. The observation of a defined spatial localization of an enzyme complex catalyzing two key reactions of central metabolism poses questions regarding possible consequences for the availability of substrates and products within the cell and other bacterial enzyme complexes showing similar behavior.
对于许多细菌蛋白,已证明其在细胞内有特定的定位,但参与中心代谢的酶通常被认为在细胞质中均匀分布。在此,我们提供了一个放线菌中独特酶复合物——混合丙酮酸/2-氧代戊二酸脱氢酶复合物(PDH-ODH)空间定义定位的例子。在非放线菌细胞中,PDH和ODH形成由三种不同亚基E1、E2和E3组成的兆道尔顿大小的单独多酶复合物。放线菌的PDH-ODH复合物由四个亚基AceE(E1p)、AceF(E2p)、Lpd(E3)和OdhA(E1oE2o)组成。利用荧光显微镜,我们观察到在[具体条件未给出]中,所有四个亚基在细胞极的不同斑点中共定位,在较大的细胞中,细胞中部还存在其他斑点。这些结果进一步证实了混合复合物的存在。未磷酸化的OdhI蛋白与OdhA结合并抑制ODH活性,它与OdhA在极处共定位,而不与OdhA结合的磷酸化OdhI则分布在整个细胞质中。与ODH代谢相关的异柠檬酸脱氢酶和谷氨酸脱氢酶在细胞质中均匀分布。基于单个PDH-ODH亚基的现有结构数据,必须假定一种不同于经典PDH和ODH复合物的混合复合物新型超分子结构。我们的结果表明,在极处或细胞中部的定位很可能是由类核排斥引起的,并导致放线菌中代谢的空间组织化,其后果还有待研究。重要性 参与细菌中心代谢的酶通常被认为分布在整个细胞质中。在此,我们提供了一个放线菌独特酶复合物——由四个不同亚基组成的混合丙酮酸脱氢酶/2-氧代戊二酸脱氢酶(PDH-ODH)复合物空间定义定位的例子。通过与mVenus或mCherry融合并利用荧光显微镜,我们表明所有四个亚基在细胞极的不同斑点中共定位,在较大的细胞中,在细胞中部观察到其他斑点。这些结果清楚地支持了混合PDH-ODH复合物的存在,并表明在其他放线菌中可能有类似的定位。对催化中心代谢两个关键反应的酶复合物明确空间定位的观察,引发了关于细胞内底物和产物可用性的可能后果以及其他表现出类似行为的细菌酶复合物的问题。