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植物信号蛋白中的亮氨酸丰富重复受体样激酶家族中蛋白质结构域的非对称进化。

Asymmetric Evolution of Protein Domains in the Leucine-Rich Repeat Receptor-Like Kinase Family of Plant Signaling Proteins.

机构信息

Department of Biology, University of Massachusetts Amherst, Amherst, MA 01002, USA.

出版信息

Mol Biol Evol. 2023 Oct 4;40(10). doi: 10.1093/molbev/msad220.

Abstract

The coding sequences of developmental genes are expected to be deeply conserved, with cis-regulatory change driving the modulation of gene function. In contrast, proteins with roles in defense are expected to evolve rapidly, in molecular arms races with pathogens. However, some gene families include both developmental and defense genes. In these families, does the tempo and mode of evolution differ between genes with divergent functions, despite shared ancestry and structure? The leucine-rich repeat receptor-like kinase (LRR-RLKs) protein family includes members with roles in plant development and defense, thus providing an ideal system for answering this question. LRR-RLKs are receptors that traverse plasma membranes. LRR domains bind extracellular ligands; RLK domains initiate intracellular signaling cascades in response to ligand binding. In LRR-RLKs with roles in defense, LRR domains evolve faster than RLK domains. To determine whether this asymmetry extends to LRR-RLKs that function primarily in development, we assessed evolutionary rates and tested for selection acting on 11 subfamilies of LRR-RLKs, using deeply sampled protein trees. To assess functional evolution, we performed heterologous complementation assays in Arabidopsis thaliana (Arabidopsis). We found that the LRR domains of all tested LRR-RLK proteins evolved faster than their cognate RLK domains. All tested subfamilies of LRR-RLKs had strikingly similar patterns of molecular evolution, despite divergent functions. Heterologous transformation experiments revealed that multiple mechanisms likely contribute to the evolution of LRR-RLK function, including escape from adaptive conflict. Our results indicate specific and distinct evolutionary pressures acting on LRR versus RLK domains, despite diverse organismal roles for LRR-RLK proteins.

摘要

发育基因的编码序列预计会深度保守,顺式调控变化驱动基因功能的调节。相比之下,在与病原体的分子军备竞赛中,防御相关的蛋白质预计会快速进化。然而,一些基因家族同时包含发育和防御基因。在这些家族中,尽管具有共同的祖先和结构,但具有不同功能的基因的进化速度和模式是否存在差异?富含亮氨酸重复受体样激酶 (LRR-RLK) 蛋白家族包括在植物发育和防御中具有作用的成员,因此为回答这个问题提供了一个理想的系统。LRR-RLK 是跨膜的受体。LRR 结构域结合细胞外配体;RLK 结构域在配体结合后启动细胞内信号级联反应。在具有防御作用的 LRR-RLK 中,LRR 结构域的进化速度快于 RLK 结构域。为了确定这种不对称性是否扩展到主要在发育中起作用的 LRR-RLK,我们使用深度采样的蛋白质树评估了 11 个 LRR-RLK 亚家族的进化速度,并测试了选择作用。为了评估功能进化,我们在拟南芥 (Arabidopsis) 中进行了异源互补测定。我们发现,所有测试的 LRR-RLK 蛋白的 LRR 结构域的进化速度都快于其同源 RLK 结构域。尽管功能不同,但所有测试的 LRR-RLK 亚家族的分子进化模式都非常相似。异源转化实验表明,多种机制可能导致 LRR-RLK 功能的进化,包括逃避适应性冲突。我们的结果表明,尽管 LRR-RLK 蛋白在不同的生物体中具有不同的作用,但 LRR 与 RLK 结构域受到特定而独特的进化压力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab9f/10588794/f88199b3db12/msad220f1.jpg

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