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通过主动有限沃罗诺伊模型弥合集体运动性与上皮-间质转化之间的差距。

Bridging the gap between collective motility and epithelial-mesenchymal transitions through the active finite voronoi model.

作者信息

Huang Junxiang, Levine Herbert, Bi Dapeng

机构信息

Department of Physics, Northeastern University, Boston, Massachusetts 02215, USA.

Center for Theoretical Biological Physics, Northeastern University, Boston, Massachusetts 02215, USA.

出版信息

Soft Matter. 2023 Dec 13;19(48):9389-9398. doi: 10.1039/d3sm00327b.

Abstract

We introduce an active version of the recently proposed finite Voronoi model of epithelial tissue. The resultant Active Finite Voronoi (AFV) model enables the study of both confluent and non-confluent geometries and transitions between them, in the presence of active cells. Our study identifies six distinct phases, characterized by aggregation-segregation, dynamical jamming-unjamming, and epithelial-mesenchymal transitions (EMT), thereby extending the behavior beyond that observed in previously studied vertex-based models. The AFV model with rich phase diagram provides a cohesive framework that unifies the well-observed progression to collective motility unjamming with the intricate dynamics enabled by EMT. This approach should prove useful for challenges in developmental biology systems as well as the complex context of cancer metastasis. The simulation code is also provided.

摘要

我们引入了最近提出的上皮组织有限Voronoi模型的活性版本。由此产生的活性有限Voronoi(AFV)模型能够在存在活性细胞的情况下研究汇合和非汇合几何形状以及它们之间的转变。我们的研究确定了六个不同的阶段,其特征是聚集-分离、动态阻塞-解阻塞以及上皮-间质转化(EMT),从而扩展了先前基于顶点的模型中观察到的行为。具有丰富相图的AFV模型提供了一个连贯的框架,将观察到的向集体运动性解阻塞的进展与EMT所带来的复杂动力学统一起来。这种方法对于发育生物学系统中的挑战以及癌症转移的复杂情况应该是有用的。同时还提供了模拟代码。

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