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收集了有经过精心分类的浮游有孔虫贝壳的 X 射线微计算机断层扫描图像。

Collection of X-ray micro computed tomography images of shells of planktic foraminifera with curated taxonomy.

机构信息

MARUM Center for Marine Environmental Sciences, University of Bremen, Leobener Straße 8, Bremen, 28359, Germany.

Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan.

出版信息

Sci Data. 2023 Oct 5;10(1):679. doi: 10.1038/s41597-023-02498-0.

Abstract

Calcite shells of planktic foraminifera (Protista, Rhizaria) constitute a large portion of deep-sea sediments. The shells are constructed by sequential addition of partly overlapping chambers with diverse shapes, resulting in complex shell architectures, which are genetically fixed and diagnostic at the species level. The characterisation of the complete architecture requires three-dimensional imaging of the shell, including the partially or entirely covered juvenile chambers. Here we provide reconstructed x-ray micro computed tomography image stacks of 179 specimens of extant planktic foraminifera collected from plankton tows, sediment traps and surface sediments. The specimens have fully resolved and curated taxonomy and represent 43 of the currently recognised 48 holoplanktic species and subspecies. The image stacks form a basis for further applications, such as the characterisation of the architectural morphospace of the extant taxa, allowing studies of species functional ecology, calcification intensity and reconstructions of phylogenetic relationships.

摘要

浮游有孔虫(原生生物界、辐射虫门)的钙质壳是深海沉积物的重要组成部分。这些壳由部分重叠的具有不同形状的房室依次添加而成,形成了复杂的壳结构,这种结构在种的水平上是遗传固定的,具有诊断意义。完整的结构特征需要对壳进行三维成像,包括部分或完全覆盖的幼体房室。在这里,我们提供了 179 个浮游有孔虫标本的重建 X 射线微计算机断层扫描图像堆栈,这些标本是从浮游生物拖网、沉积物捕集器和表层沉积物中采集的。这些标本具有完全解决的和经过整理的分类学特征,代表了目前 48 个全浮游种和亚种中的 43 个。这些图像堆栈为进一步的应用提供了基础,例如对现存分类群的建筑形态空间进行特征描述,从而可以研究物种的功能生态学、钙化强度以及系统发育关系的重建。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f6b7/10556072/3c45a4b706f2/41597_2023_2498_Fig1_HTML.jpg

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