Villa Nancy, Fraser Christopher S
bioRxiv. 2023 Sep 30:2023.09.29.560218. doi: 10.1101/2023.09.29.560218.
Messenger RNA (mRNA) recruitment to the 40S ribosomal subunit is mediated by eukaryotic initiation factor 4F (eIF4F). This complex includes 3 subunits: eIF4E (m G cap binding protein), eIF4A (DEAD box helicase), and eIF4G. Mammalian eIF4G is a scaffold that coordinates the activities of eIF4E and eIF4A and provides a bridge to connect the mRNA and 40S ribosomal subunit through its interaction with eIF3. While the roles of many eIF4G binding domains are relatively clear, the precise function of RNA binding by eIF4G remains to be elucidated. In this work, we used an eIF4G-dependent translation assay to reveal that the RNA binding domain (eIF4G-RBD; amino acids 682-720) stimulates translation. This stimulating activity is observed when eIF4G is independently tethered to an internal region of the mRNA, suggesting that the eIF4G-RBD promotes translation by a mechanism that is independent of the m G cap and mRNA tethering. Using a kinetic helicase assay, we show that the eIF4G-RBD has a minimal effect on eIF4A helicase activity, demonstrating that the eIF4G-RBD is not required to coordinate eIF4F-dependent duplex unwinding. Unexpectedly, native gel electrophoresis and fluorescence polarization assays reveal a previously unidentified direct interaction between eIF4G and the 40S subunit. Using binding assays, our data show that this 40S subunit interaction is separate from the previously characterized interaction between eIF4G and eIF3. Thus, our work reveals how eIF4F can bind to the 40S subunit using eIF3-dependent and eIF3-independent binding domains to promote translation initiation.
信使核糖核酸(mRNA)募集到40S核糖体亚基是由真核起始因子4F(eIF4F)介导的。该复合物包括3个亚基:eIF4E(m⁷G帽结合蛋白)、eIF4A(DEAD盒解旋酶)和eIF4G。哺乳动物的eIF4G是一种支架蛋白,可协调eIF4E和eIF4A的活性,并通过与eIF3相互作用提供一座桥梁来连接mRNA和40S核糖体亚基。虽然许多eIF4G结合结构域的作用相对明确,但eIF4G与RNA结合的确切功能仍有待阐明。在这项研究中,我们使用了一种依赖eIF4G的翻译检测方法来揭示RNA结合结构域(eIF4G-RBD;氨基酸682 - 720)可刺激翻译。当eIF4G独立地与mRNA的内部区域相连时可观察到这种刺激活性,这表明eIF4G-RBD通过一种独立于m⁷G帽和mRNA连接的机制来促进翻译。使用动力学解旋酶检测方法,我们发现eIF4G-RBD对eIF4A解旋酶活性的影响极小,这表明eIF4G-RBD并非协调eIF4F依赖性双链解旋所必需的。出乎意料的是,非变性凝胶电泳和荧光偏振检测揭示了eIF4G与40S亚基之间一种先前未被识别的直接相互作用。通过结合检测,我们的数据表明这种与40S亚基的相互作用与先前已描述的eIF4G和eIF3之间的相互作用是分开的。因此,我们的研究揭示了eIF4F如何利用依赖eIF3和不依赖eIF3的结合结构域与40S亚基结合以促进翻译起始。