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线粒体细胞色素氧化酶亚基I(mtCOI)基因序列在越南西南部物种鉴定中的应用。

The use of mtCOI gene sequences in identifying species in the Southwest of Vietnam.

作者信息

Lam Tran Thi Huyen, Dinh Quang Minh, Truong Van Thi Bich, Truong Ngon Trong, Tran Nam Sy, Nguyen Ton Huu Duc

机构信息

Institute of Food and Biotechnology, Can Tho University, Xuan Khanh Ward, Ninh Kieu District, Can Tho, 900000, Viet Nam.

Institute of High Quality Biotechnology - Food Technology, Cuu Long University, National Road 1A, Phu Quoi Ward, Long Ho District, Vinh Long, 850000, Viet Nam.

出版信息

Heliyon. 2023 Sep 14;9(9):e20139. doi: 10.1016/j.heliyon.2023.e20139. eCollection 2023 Sep.

Abstract

genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of for identification purposes and to understand genetic relationships. The morphological characteristics of differed obviously from and . After classification based on morphology, the total deoxyribonucleic acid of fish samples was isolated, and the mitochondrial cytochrome C oxidase subunit I genes were successfully amplified using the polymerase chain reaction method. At approximately 617bp, the obtained mitochondrial cytochrome C oxidase subunit I gene sequences were highly similar to the reference sequences on Genbank (85.90-100%). The phylogenetic graphic was divided into five distinct groups, where was grouped in one group; and and were grouped together. The results suggest that was an entirely different species from with a mean genetic divergence of up to 14%. However, further studies using a combination of other types of deoxyribonucleic acid barcoding together with morphological features should be undertaken to confirm these findings.

摘要

该属的特点是体型小且形态多变,使其能够适应不同的栖息地。本文分析了[具体物种名称1]的线粒体细胞色素C氧化酶亚基I基因序列和形态,以进行鉴定并了解遗传关系。[具体物种名称1]的形态特征与[具体物种名称2]和[具体物种名称3]明显不同。基于形态进行分类后,分离了鱼类样本的总脱氧核糖核酸,并使用聚合酶链反应方法成功扩增了线粒体细胞色素C氧化酶亚基I基因。所获得的线粒体细胞色素C氧化酶亚基I基因序列约为617bp,与Genbank上的参考序列高度相似(85.90 - 100%)。系统发育图分为五个不同的组,其中[具体物种名称1]被归为一组;[具体物种名称2]和[具体物种名称3]被归在一起。结果表明,[具体物种名称1]与[具体物种名称2]是完全不同的物种,平均遗传差异高达14%。然而,应进一步结合其他类型的脱氧核糖核酸条形码和形态特征进行研究,以证实这些发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0ec/10559908/8c5c36940e4d/gr1.jpg

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