Department of General Practice, Liaocheng People's Hospital, No.67 West Dongchang Road, Liaocheng 252000, Shandong Province, China.
Department of Pediatrics, Qilu Hospital of Shandong University, No.107 West Wenhua Road, Jinan 250012, Shandong Province, China.
Cytokine. 2023 Dec;172:156390. doi: 10.1016/j.cyto.2023.156390. Epub 2023 Oct 7.
Sepsis-associated encephalopathy (SAE) is frequently present at the acute and chronic phase of sepsis, which is characterized by delirium, coma, and cognitive dysfunction. Despite the increased morbidity and mortality of SAE, the pathogenesis of SAE remains unclear. This study aims to discover the potential biomarkers, so as to clear the pathogenesis potentially contributing to the development of SAE and provide new therapeutic strategies for the treatment of SAE.
The GSE135838 dataset was obtained from the Gene Expression Omnibus (GEO) database and utilized for analysis the differentially expressed genes (DEGs). The DEGs were analyzed by limma package of R language and the extracellular protein-differentially expressed genes (EP-DEGs) were screened by the Human Protein Atlas (HPA) and UniProt database. Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were carried out to analyze the function and pathway of EP-DEGs. STRING, Cytoscape, MCODE and Cytohubba were used to construct a protein-protein interaction (PPI) network and screen key EP-DEGs. Key EP-DEGs levels were detected in the cerebrospinal fluid (CSF) of SAE patients and non-sepsis patients with critical illness. ROC curve was used to evaluate the diagnostic of SAE.
We screened 82 EP-DEGs from DEGs. EP-DEGs were enriched in cytokine-cytokine receptor interaction, IL-17 signaling pathway and NOD-like receptor signaling pathway. We identified 2 key extracellular proteins IL-1B and IL-8. We clinically verified that IL-6 and IL-8 levels were increased in CSF of SAE patients and CSF IL-8 (AUC = 0.882, 95 % CI = 0.775-0.988) had a higher accuracy in the diagnosis of SAE than CSF IL-6 (AUC = 0.824, 95 % CI = 0.686-0.961). Furthermore, we found that the IL-8 levels in CSF might not associated with Glasgow Coma Scale (GCS) scores of SAE patients.
IL-8 may be the key extracellular cytokine in the pathogenesis of SAE. Bioinformatics methods were used to explore the biomarkers of SAE and validated the results in clinical samples. Our findings indicate that the IL-8 in CSF might be the potential diagnostic biomarker and therapeutic target in SAE.
脓毒症相关性脑病(SAE)在脓毒症的急性和慢性期很常见,其特征为谵妄、昏迷和认知功能障碍。尽管 SAE 的发病率和死亡率增加,但 SAE 的发病机制仍不清楚。本研究旨在发现潜在的生物标志物,以期阐明可能导致 SAE 发展的发病机制,并为 SAE 的治疗提供新的治疗策略。
从基因表达综合数据库(GEO)中获取 GSE135838 数据集,并利用 R 语言中的 limma 包分析差异表达基因(DEGs)。通过人类蛋白质图谱(HPA)和 UniProt 数据库筛选细胞外蛋白差异表达基因(EP-DEGs)。进行基因本体论(GO)分析和京都基因与基因组百科全书(KEGG)通路富集分析,以分析 EP-DEGs 的功能和通路。利用 STRING、Cytoscape、MCODE 和 Cytohubba 构建蛋白质-蛋白质相互作用(PPI)网络,并筛选关键 EP-DEGs。检测 SAE 患者和危重病非脓毒症患者脑脊液(CSF)中关键 EP-DEGs 的水平。ROC 曲线用于评估 SAE 的诊断。
我们从 DEGs 中筛选出 82 个 EP-DEGs。EP-DEGs 富集于细胞因子-细胞因子受体相互作用、IL-17 信号通路和 NOD 样受体信号通路。我们确定了 2 个关键的细胞外蛋白 IL-1B 和 IL-8。我们临床验证了 SAE 患者 CSF 中 IL-6 和 IL-8 水平升高,CSF IL-8(AUC=0.882,95%CI=0.775-0.988)在诊断 SAE 方面的准确性高于 CSF IL-6(AUC=0.824,95%CI=0.686-0.961)。此外,我们发现 CSF 中 IL-8 水平可能与 SAE 患者的格拉斯哥昏迷量表(GCS)评分无关。
IL-8 可能是 SAE 发病机制中的关键细胞外细胞因子。本研究采用生物信息学方法探索 SAE 的生物标志物,并在临床样本中验证了结果。我们的研究结果表明,CSF 中的 IL-8 可能是 SAE 的潜在诊断生物标志物和治疗靶点。