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全基因组范围内的 A 到 I RNA 编辑失调导致环状 RNA 紊乱,促进宫颈癌的发展。

Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer.

机构信息

Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, China.

School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, 211166, China.

出版信息

Comput Biol Med. 2023 Nov;166:107546. doi: 10.1016/j.compbiomed.2023.107546. Epub 2023 Sep 29.

Abstract

Cervical cancer, the second most common female malignant tumor, seriously threatens women's health and lives. Despite the availability of the HPV vaccine, effective treatment options for cervical cancer are still lacking. New research perspectives now clarify that RNA editing dysregulation and changes in circRNA expression are jointly involved in disease pathogenesis, so molecular changes associated with circRNA and RNA editing may provide clues for the development of new therapeutic strategies for cervical cancer. In this study, we designed a series of pipelines to identify and analyze dysregulated RNA editing events in circRNAs. Our findings indicate a decrease in A-to-I RNA editing levels in cervical cancer compared to normal tissues, and editing may influence the back-splicing process of circRNAs through structural modifications of Alu elements. Moreover, our research reveals that RNA editing could modulate circRNA biogenesis by influencing RNA binding protein (RBP) binding on a transcriptome-wide scale, as well as influence the expression and coding potential of circRNAs. Importantly, we identified three RNA editing sites that could serve as potential biomarkers. In summary, our study presents a comprehensive landscape of RNA editing perturbations in circRNAs, providing new insights into the complex relationship between RNA editing and circRNA dysregulation in cervical cancer.

摘要

宫颈癌是女性第二大常见恶性肿瘤,严重威胁着女性的健康和生命。尽管 HPV 疫苗已经问世,但宫颈癌的有效治疗方法仍然缺乏。新的研究视角现在阐明,RNA 编辑失调和 circRNA 表达变化共同参与疾病的发病机制,因此与 circRNA 和 RNA 编辑相关的分子变化可能为宫颈癌新治疗策略的发展提供线索。在这项研究中,我们设计了一系列的流程来识别和分析 circRNAs 中失调的 RNA 编辑事件。我们的研究结果表明,与正常组织相比,宫颈癌中的 A-to-I RNA 编辑水平降低,并且编辑可能通过 Alu 元件的结构修饰影响 circRNAs 的反向剪接过程。此外,我们的研究揭示,RNA 编辑可以通过影响 RNA 结合蛋白(RBP)在全转录组范围内对转录本的结合,以及影响 circRNAs 的表达和编码潜力,从而调节 circRNA 的生物发生。重要的是,我们鉴定了三个可能作为潜在生物标志物的 RNA 编辑位点。总之,我们的研究展示了 circRNAs 中 RNA 编辑扰动的全面情况,为 RNA 编辑与宫颈癌中 circRNA 失调之间的复杂关系提供了新的见解。

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