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时空建模在有限种群丰度预测中的应用

An Application of Spatio-temporal Modeling to Finite Population Abundance Prediction.

作者信息

Higham Matt, Dumelle Michael, Hammond Carly, Ver Hoef Jay, Wells Jeff

机构信息

Department of Math, Computer Science, and Statistics, St. Lawrence University.

United States Environmental Protection Agency.

出版信息

J Agric Biol Environ Stat. 2023 Aug 7;28(3):1-25. doi: 10.1007/s13253-023-00565-y.

DOI:10.1007/s13253-023-00565-y
PMID:37844016
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10569113/
Abstract

Spatio-temporal models can be used to analyze data collected at various spatial locations throughout multiple time points. However, even with a finite number of spatial locations, there may be a lack of resources to collect data from every spatial location at every time point. We develop a spatio-temporal finite-population block kriging (ST-FPBK) method to predict a quantity of interest, such as a mean or total, across a finite number of spatial locations. This ST-FPBK predictor incorporates an appropriate variance reduction for sampling from a finite population. Through an application to moose surveys in the east-central region of Alaska, we show that the predictor has a substantially smaller standard error compared to a predictor from the purely spatial model that is currently used to analyze moose surveys in the region. We also show how the model can be used to forecast a prediction for abundance in a time point for which spatial locations have not yet been surveyed. A separate simulation study shows that the spatio-temporal predictor is unbiased and that prediction intervals from the ST-FPBK predictor attain appropriate coverage. For ecological monitoring surveys completed with some regularity through time, use of ST-FPBK could improve precision. We also give an R package that ecologists and resource managers could use to incorporate data from past surveys in predicting a quantity from a current survey.

摘要

时空模型可用于分析在多个时间点的不同空间位置收集的数据。然而,即使空间位置数量有限,也可能缺乏资源在每个时间点从每个空间位置收集数据。我们开发了一种时空有限总体分块克里金法(ST-FPBK)来预测有限数量空间位置上的感兴趣量,比如均值或总量。这种ST-FPBK预测器针对从有限总体中抽样纳入了适当的方差缩减。通过应用于阿拉斯加中东部地区的驼鹿调查,我们表明与目前用于分析该地区驼鹿调查的纯空间模型的预测器相比,该预测器的标准误差要小得多。我们还展示了该模型如何用于预测尚未进行空间位置调查的时间点的丰度预测。一项单独的模拟研究表明,时空预测器是无偏的,并且ST-FPBK预测器的预测区间具有适当的覆盖率。对于随时间定期完成的生态监测调查,使用ST-FPBK可以提高精度。我们还提供了一个R包,生态学家和资源管理者可以用它来纳入过去调查的数据,以预测当前调查中的一个量。

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本文引用的文献

1
sptotal: an R package for predicting totals and weighted sums from spatial data.sptotal:一个用于从空间数据预测总量和加权和的R软件包。
J Open Source Softw. 2023 May 24;8(85):1-4. doi: 10.21105/joss.05363.
2
A comparison of design-based and model-based approaches for finite population spatial sampling and inference.基于设计和基于模型的有限总体空间抽样与推断方法比较。
Methods Ecol Evol. 2022 Sep 1;13(9):2018-2029. doi: 10.1111/2041-210X.13919.
3
Bayesian spatio-temporal joint disease mapping of Covid-19 cases and deaths in local authorities of England.英格兰地方当局新冠疫情病例及死亡情况的贝叶斯时空联合疾病映射分析
Spat Stat. 2022 Jun;49:100519. doi: 10.1016/j.spasta.2021.100519. Epub 2021 May 12.
4
Estimation of spatiotemporal trends in bat abundance from mortality data collected at wind turbines.基于风电场死亡率数据估算蝙蝠丰度的时空变化趋势。
Conserv Biol. 2021 Feb;35(1):227-238. doi: 10.1111/cobi.13554. Epub 2020 Jul 3.
5
An accessible method for implementing hierarchical models with spatio-temporal abundance data.一种适用于实现时空丰度数据的层次模型的方法。
PLoS One. 2012;7(11):e49395. doi: 10.1371/journal.pone.0049395. Epub 2012 Nov 16.
6
An autoregressive approach to spatio-temporal disease mapping.一种用于时空疾病映射的自回归方法。
Stat Med. 2008 Jul 10;27(15):2874-89. doi: 10.1002/sim.3103.