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子宫内膜癌炎症反应相关稳健的机器学习特征:基于多队列研究。

The inflammatory response-related robust machine learning signature in endometrial cancer: Based on multi-cohort studies.

机构信息

Department of Obstetrics and Gynaecology, Guangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou, China.

Department of Nephrology, Beijing Ditan Hospital, Capital Medical University, Beijing, China.

出版信息

J Gene Med. 2024 Jan;26(1):e3603. doi: 10.1002/jgm.3603. Epub 2023 Oct 16.

Abstract

Uterine corpus endometrial carcinoma (UCEC) is a prevalent form of cancer in women, affecting the inner lining of the uterus. Inflammation plays a crucial role in the progression and prognosis of cancer, making it important to identify inflammatory response-related subtypes in UCEC for targeted therapy and personalized medicine. This study discovered significant variation in immune response within UCEC tumors based on molecular subtypes of inflammatory response-related genes. Subtype A showed a more favorable prognosis and better response to immunotherapies like anti-CTLA4 and anti-PDCD1 therapy. Functional analysis revealed subtype-specific differences in immune response, with subtype A exhibiting higher expression of genes related to cytokine signaling pathways, NK cell-mediated cytotoxicity pathways and inflammatory processes. Subtype A also showed increased sensitivity to three chemotherapeutic agents. A 12-gene inflammatory response-related signature was found to have prognostic value for 1, 2 and 3 year survival in UCEC patients. Additionally, a validated machine learning-based signature demonstrated significant differences in clinical traits between low-risk and high-risk cohorts. Elevated risk scores were associated with higher pathological grading, older age, advanced stage and immune subtype C2. Low-risk groups had higher infiltration of immune cell types such as CD8 + T cells and activated CD4 + cells. However, the abundance of cytotoxic immune cells decreased with increasing risk scores. Finally, PCR was applied to test the different expression in P2PX4. P2RX4 knockdown inhibited the proliferation and proliferation of the endometrial carcinoma Ishikawa cell line. In conclusion, this developed signature can serve as a clinical prediction index and reveal distinct immune expression patterns. Ultimately, this study has the potential to enhance targeted therapy and personalized medicine for UCEC patients.

摘要

子宫内膜癌(UCEC)是女性常见的癌症形式,影响子宫的内层。炎症在癌症的进展和预后中起着关键作用,因此对于 UCEC 中的炎症反应相关亚型进行鉴定以进行靶向治疗和个性化医学非常重要。本研究基于炎症反应相关基因的分子亚型发现 UCEC 肿瘤内免疫反应存在显著差异。A 型表现出更好的预后和对免疫疗法(如抗 CTLA4 和抗 PDCD1 治疗)的更好反应。功能分析揭示了免疫反应的亚型特异性差异,A 型表现出与细胞因子信号通路、NK 细胞介导的细胞毒性途径和炎症过程相关的基因更高表达。A 型也对三种化疗药物更敏感。发现 12 个炎症反应相关基因的signature 对 UCEC 患者 1、2 和 3 年的生存具有预后价值。此外,验证的基于机器学习的 signature 证明了低风险和高风险队列之间临床特征的显著差异。升高的风险评分与较高的病理分级、较老的年龄、较晚期和免疫亚型 C2 相关。低风险组的 CD8+T 细胞和激活的 CD4+细胞等免疫细胞类型的浸润较高。然而,随着风险评分的增加,细胞毒性免疫细胞的丰度下降。最后,PCR 用于测试 P2PX4 的不同表达。P2RX4 敲低抑制子宫内膜癌 Ishikawa 细胞系的增殖和增殖。总之,该开发的 signature 可作为临床预测指标并揭示不同的免疫表达模式。最终,本研究有可能增强 UCEC 患者的靶向治疗和个性化医学。

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