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基于 Mask R-CNN 的深度学习多重发现分割在药物诱导肝损伤大鼠模型中的应用。

Application of multiple-finding segmentation utilizing Mask R-CNN-based deep learning in a rat model of drug-induced liver injury.

机构信息

College of Veterinary Medicine, Chungnam National University, 99 Daehak-ro, Yuseong-gu, Daejeon, 34134, Republic of Korea.

Research and Development Team, LAC Inc, Seoul, Republic of Korea.

出版信息

Sci Rep. 2023 Oct 16;13(1):17555. doi: 10.1038/s41598-023-44897-8.

DOI:10.1038/s41598-023-44897-8
PMID:37845356
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10579263/
Abstract

Drug-induced liver injury (DILI) presents significant diagnostic challenges, and recently artificial intelligence-based deep learning technology has been used to predict various hepatic findings. In this study, we trained a set of Mask R-CNN-based deep algorithms to learn and quantify typical toxicant induced-histopathological lesions, portal area, and connective tissue in Sprague Dawley rats. We compared a set of single-finding models (SFMs) and a combined multiple-finding model (MFM) for their ability to simultaneously detect, classify, and quantify multiple hepatic findings on rat liver slide images. All of the SFMs yielded mean average precision (mAP) values above 85%, suggesting that the models had been successfully established. The MFM showed better performance than the SFMs, with a total mAP value of 92.46%. We compared the model predictions for slide images with ground-truth annotations generated by an accredited pathologist. For the MFM, the overall and individual finding predictions were highly correlated with the annotated areas, with R-squared values of 0.852, 0.952, 0.999, 0.990, and 0.958 being obtained for portal area, infiltration, necrosis, vacuolation, and connective tissue (including fibrosis), respectively. Our results indicate that the proposed MFM could be a useful tool for detecting and predicting multiple hepatic findings in basic non-clinical study settings.

摘要

药物性肝损伤 (DILI) 存在显著的诊断挑战,最近人工智能深度学习技术已被用于预测各种肝脏发现。在这项研究中,我们训练了一组基于 Mask R-CNN 的深度算法,以学习和量化 Sprague Dawley 大鼠中典型的毒物诱导的组织病理学病变、门脉区域和结缔组织。我们比较了一组单一发现模型 (SFMs) 和一个组合的多个发现模型 (MFM),以评估它们在大鼠肝幻灯片图像上同时检测、分类和量化多种肝脏发现的能力。所有的 SFMs 的平均精度 (mAP) 值均高于 85%,表明模型已经成功建立。MFM 的性能优于 SFMs,总 mAP 值为 92.46%。我们将模型对幻灯片图像的预测与经过认证的病理学家生成的地面真实注释进行了比较。对于 MFM,整体和个别发现的预测与注释区域高度相关,获得的 R 平方值分别为 0.852、0.952、0.999、0.990 和 0.958,用于门脉区域、浸润、坏死、空泡和结缔组织(包括纤维化)。我们的结果表明,所提出的 MFM 可以成为在基础非临床研究环境中检测和预测多种肝脏发现的有用工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/030458552c47/41598_2023_44897_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/377decea3f6e/41598_2023_44897_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/a999bb4978cb/41598_2023_44897_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/6829f0bedf24/41598_2023_44897_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/420c5586a84e/41598_2023_44897_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/badb4ca10c18/41598_2023_44897_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/030458552c47/41598_2023_44897_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/377decea3f6e/41598_2023_44897_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/a999bb4978cb/41598_2023_44897_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/6829f0bedf24/41598_2023_44897_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/420c5586a84e/41598_2023_44897_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/badb4ca10c18/41598_2023_44897_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8b7/10579263/030458552c47/41598_2023_44897_Fig6_HTML.jpg

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本文引用的文献

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Deep learning-based quantification of NAFLD/NASH progression in human liver biopsies.基于深度学习的人类肝活检中 NAFLD/NASH 进展的定量评估。
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