用于植物基因工程生物传感器的生物和分子组件。

Biological and Molecular Components for Genetically Engineering Biosensors in Plants.

作者信息

Liu Yang, Yuan Guoliang, Hassan Md Mahmudul, Abraham Paul E, Mitchell Julie C, Jacobson Daniel, Tuskan Gerald A, Khakhar Arjun, Medford June, Zhao Cheng, Liu Chang-Jun, Eckert Carrie A, Doktycz Mitchel J, Tschaplinski Timothy J, Yang Xiaohan

机构信息

Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.

The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.

出版信息

Biodes Res. 2022 Nov 9;2022:9863496. doi: 10.34133/2022/9863496. eCollection 2022.

Abstract

Plants adapt to their changing environments by sensing and responding to physical, biological, and chemical stimuli. Due to their sessile lifestyles, plants experience a vast array of external stimuli and selectively perceive and respond to specific signals. By repurposing the logic circuitry and biological and molecular components used by plants in nature, genetically encoded plant-based biosensors (GEPBs) have been developed by directing signal recognition mechanisms into carefully assembled outcomes that are easily detected. GEPBs allow for monitoring of biological processes in plants to facilitate basic studies of plant growth and development. GEPBs are also useful for environmental monitoring, plant abiotic and biotic stress management, and accelerating design-build-test-learn cycles of plant bioengineering. With the advent of synthetic biology, biological and molecular components derived from alternate natural organisms (e.g., microbes) and/or parts have been used to build GEPBs. In this review, we summarize the framework for engineering different types of GEPBs. We then highlight representative validated biological components for building plant-based biosensors, along with various applications of plant-based biosensors in basic and applied plant science research. Finally, we discuss challenges and strategies for the identification and design of biological components for plant-based biosensors.

摘要

植物通过感知并响应物理、生物和化学刺激来适应不断变化的环境。由于其固着的生活方式,植物会经历大量的外部刺激,并选择性地感知和响应特定信号。通过重新利用植物在自然界中使用的逻辑电路以及生物和分子组件,人们开发出了基因编码的基于植物的生物传感器(GEPBs),即将信号识别机制导向易于检测的精心组装的结果。GEPBs可用于监测植物中的生物过程,以促进对植物生长和发育的基础研究。GEPBs也有助于环境监测、植物非生物和生物胁迫管理,以及加速植物生物工程的设计-构建-测试-学习循环。随着合成生物学的出现,源自其他天然生物体(如微生物)的生物和分子组件及/或部件已被用于构建GEPBs。在本综述中,我们总结了工程化不同类型GEPBs的框架。然后,我们重点介绍了用于构建基于植物的生物传感器的经过验证的代表性生物组件,以及基于植物的生物传感器在基础和应用植物科学研究中的各种应用。最后,我们讨论了用于基于植物的生物传感器的生物组件识别和设计的挑战及策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e89/10521658/02f92395eb5d/9863496.fig.001.jpg

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