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非洲爪蟾核糖体DNA启动子的上游结构域在显微注射的卵母细胞中被揭示。

Upstream domains of the Xenopus laevis rDNA promoter are revealed in microinjected oocytes.

作者信息

Windle J, Sollner-Webb B

出版信息

Mol Cell Biol. 1986 Apr;6(4):1228-34. doi: 10.1128/mcb.6.4.1228-1234.1986.

DOI:10.1128/mcb.6.4.1228-1234.1986
PMID:3785161
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC367634/
Abstract

The DNA sequences involved in promoting transcription of the Xenopus laevis rRNA genes were determined by microinjecting a series of deletion mutants into oocyte nuclei. A very small promoter region is sufficient to direct efficient transcription when templates are microinjected at high rDNA concentration, since 5'delta- 9 and 3'delta +6 templates are fully active. However, as the concentration of injected template is decreased, an increasing requirement for upstream domains, extending to nucleotide approximately -170, is observed. The major downstream border of the required region does not change. This apparently expanding 5' promoter border results from the fact that, as the rDNA concentration is decreased, transcription from templates lacking the upstream promoter domain falls off much more sharply than does transcription from a complete promoter. In fact, the deleted promoters are virtually inactive below a threshold rDNA concentration. It is indeed the rDNA concentration that is important, for coinjected vector DNA does not increase the level of transcription obtained from low concentrations of the 5' deletions. From these data we conclude that polymerase I transcription factors can recognize and initiate transcription from a small core promoter domain, but that sequences extending upstream to nucleotide approximately -170 increase the efficiency of initiation. A model is presented that could account for these results.

摘要

通过将一系列缺失突变体显微注射到卵母细胞核中,确定了非洲爪蟾rRNA基因转录起始相关的DNA序列。当以高rDNA浓度显微注射模板时,一个非常小的启动子区域就足以指导高效转录,因为5'端缺失9个核苷酸和3'端缺失6个核苷酸的模板仍具有完全活性。然而,随着注射模板浓度的降低,对上游区域的需求增加,该区域一直延伸到大约-170位核苷酸处,而所需区域的主要下游边界没有变化。这种明显不断扩展的5'端启动子边界是由于这样一个事实:随着rDNA浓度降低,缺乏上游启动子区域的模板转录比完整启动子的转录下降得更为急剧。实际上,在低于阈值rDNA浓度时,缺失的启动子几乎没有活性。重要的确实是rDNA浓度,因为共注射的载体DNA并不能提高从低浓度5'端缺失模板获得的转录水平。从这些数据我们得出结论,聚合酶I转录因子能够识别一个小的核心启动子区域并从该区域起始转录,但延伸到大约-170位核苷酸的上游序列会提高起始效率。本文提出了一个可以解释这些结果的模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/4073ac019f2c/molcellb00088-0274-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/9d3ac5df6788/molcellb00088-0272-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/90ed36f226ee/molcellb00088-0272-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/b5f75c8ef927/molcellb00088-0272-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/ef86876ea448/molcellb00088-0273-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/de8a059be509/molcellb00088-0273-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/209f0fb30912/molcellb00088-0274-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/4073ac019f2c/molcellb00088-0274-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/9d3ac5df6788/molcellb00088-0272-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/90ed36f226ee/molcellb00088-0272-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/b5f75c8ef927/molcellb00088-0272-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/ef86876ea448/molcellb00088-0273-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/de8a059be509/molcellb00088-0273-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/209f0fb30912/molcellb00088-0274-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cda/367634/4073ac019f2c/molcellb00088-0274-b.jpg

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2
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本文引用的文献

1
Transcription of cloned Xenopus laevis ribosomal DNA microinjected into Xenopus oocytes, and the identification of an RNA polymerase I promoter.将克隆的非洲爪蟾核糖体DNA显微注射到非洲爪蟾卵母细胞中的转录,以及一种RNA聚合酶I启动子的鉴定。
Cell. 1982 Oct;30(3):835-42. doi: 10.1016/0092-8674(82)90288-4.
2
Mapping of transcription initiation and termination signals on Xenopus laevis ribosomal DNA.非洲爪蟾核糖体DNA转录起始和终止信号的定位
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A transcriptional function for the repetitive ribosomal spacer in Xenopus laevis.
紫海胆rDNA间隔区的序列分析及前体rRNA加工的观察。紫海胆rDNA的非转录间隔区序列。
Mol Biol Rep. 1993 Oct;18(3):177-82. doi: 10.1007/BF01674428.
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Two distant and precisely positioned domains promote transcription of Xenopus laevis rRNA genes: analysis with linker-scanning mutants.两个远距离且定位精确的结构域促进非洲爪蟾rRNA基因的转录:用接头扫描突变体进行分析。
Mol Cell Biol. 1986 Dec;6(12):4585-93. doi: 10.1128/mcb.6.12.4585-4593.1986.
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The core promoter of mouse rDNA consists of two functionally distinct domains.小鼠核糖体DNA的核心启动子由两个功能不同的结构域组成。
Nucleic Acids Res. 1986 Oct 10;14(19):7581-95. doi: 10.1093/nar/14.19.7581.
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Linker scanner mutagenesis of the Xenopus laevis ribosomal gene promoter.非洲爪蟾核糖体基因启动子的接头扫描诱变
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Mouse and frog violate the paradigm of species-specific transcription of ribosomal RNA genes.小鼠和青蛙违背了核糖体RNA基因物种特异性转录的范式。
Proc Natl Acad Sci U S A. 1987 Nov;84(21):7498-502. doi: 10.1073/pnas.84.21.7498.
8
The Xenopus ribosomal DNA 60- and 81-base-pair repeats are position-dependent enhancers that function at the establishment of the preinitiation complex: analysis in vivo and in an enhancer-responsive in vitro system.非洲爪蟾核糖体DNA的60碱基对和81碱基对重复序列是位置依赖性增强子,在起始前复合物形成时发挥作用:体内分析及在增强子反应性体外系统中的分析
Mol Cell Biol. 1989 Nov;9(11):5093-104. doi: 10.1128/mcb.9.11.5093-5104.1989.
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The mouse ribosomal DNA promoter has more stringent requirements in vivo than in vitro.小鼠核糖体DNA启动子在体内比在体外有更严格的要求。
Mol Cell Biol. 1990 Sep;10(9):4970-3. doi: 10.1128/mcb.10.9.4970-4973.1990.
10
Isolation and functional characterization of TIF-IB, a factor that confers promoter specificity to mouse RNA polymerase I.TIF-IB的分离与功能特性研究,TIF-IB是一种赋予小鼠RNA聚合酶I启动子特异性的因子。
Nucleic Acids Res. 1990 Mar 25;18(6):1385-93. doi: 10.1093/nar/18.6.1385.
非洲爪蟾重复核糖体间隔区的转录功能。
Nature. 1983;302(5905):223-8. doi: 10.1038/302223a0.
4
Enhancer-like properties of the 60/81 bp elements in the ribosomal gene spacer of Xenopus laevis.非洲爪蟾核糖体基因间隔区60/81碱基对元件的类增强子特性
Cell. 1984 May;37(1):285-9. doi: 10.1016/0092-8674(84)90324-6.
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Nested control regions promote Xenopus ribosomal RNA synthesis by RNA polymerase I.嵌套控制区域通过RNA聚合酶I促进非洲爪蟾核糖体RNA的合成。
Cell. 1983 Nov;35(1):199-206. doi: 10.1016/0092-8674(83)90222-2.
6
Spacer regulation of Xenopus ribosomal gene transcription: competition in oocytes.非洲爪蟾核糖体基因转录的间隔调控:卵母细胞中的竞争
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Assembly of transcriptionally active chromatin in Xenopus oocytes requires specific DNA binding factors.非洲爪蟾卵母细胞中转录活性染色质的组装需要特定的DNA结合因子。
Cell. 1984 Sep;38(2):511-21. doi: 10.1016/0092-8674(84)90506-3.
8
Localization of DNA sequences promoting RNA polymerase I activity in Drosophila.果蝇中促进RNA聚合酶I活性的DNA序列的定位
Proc Natl Acad Sci U S A. 1983 Jun;80(11):3265-8. doi: 10.1073/pnas.80.11.3265.
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Determination of the promoter region of mouse ribosomal RNA gene by an in vitro transcription system.利用体外转录系统确定小鼠核糖体RNA基因的启动子区域。
Proc Natl Acad Sci U S A. 1984 Jan;81(2):299-303. doi: 10.1073/pnas.81.2.299.
10
A component of Drosophila RNA polymerase I promoter lies within the rRNA transcription unit.果蝇RNA聚合酶I启动子的一个组件位于rRNA转录单元内。
Nature. 1983;304(5922):179-81. doi: 10.1038/304179a0.