Wetton Henry, Klukowski Piotr, Riek Roland, Güntert Peter
Institute of Molecular Physical Science, ETH Zurich, Zurich, Switzerland.
Institute of Biophysical Chemistry, Goethe University Frankfurt, Frankfurt, Germany.
Front Mol Biosci. 2023 Oct 3;10:1244029. doi: 10.3389/fmolb.2023.1244029. eCollection 2023.
Chemical shift transfer (CST) is a well-established technique in NMR spectroscopy that utilizes the chemical shift assignment of one protein (source) to identify chemical shifts of another (target). Given similarity between source and target systems (e.g., using homologs), CST allows the chemical shifts of the target system to be assigned using a limited amount of experimental data. In this study, we propose a deep-learning based workflow, ARTINA-CST, that automates this procedure, allowing CST to be carried out within minutes or hours of computational time and strictly without any human supervision. We characterize the efficacy of our method using three distinct synthetic and experimental datasets, demonstrating its effectiveness and robustness even when substantial differences exist between the source and target proteins. With its potential applications spanning a wide range of NMR projects, including drug discovery and protein interaction studies, ARTINA-CST is anticipated to be a valuable method that facilitates research in the field.
化学位移转移(CST)是核磁共振波谱学中一种成熟的技术,它利用一种蛋白质(源蛋白)的化学位移归属来识别另一种蛋白质(靶蛋白)的化学位移。鉴于源系统和靶系统之间的相似性(例如,使用同源物),CST允许使用有限的实验数据来确定靶系统的化学位移。在本研究中,我们提出了一种基于深度学习的工作流程ARTINA-CST,它能自动执行此过程,使CST能够在几分钟或几小时的计算时间内严格在无任何人工监督的情况下完成。我们使用三个不同的合成数据集和实验数据集来表征我们方法的有效性,证明即使源蛋白和靶蛋白之间存在显著差异,该方法仍具有有效性和稳健性。由于其潜在应用涵盖广泛的核磁共振项目,包括药物发现和蛋白质相互作用研究,预计ARTINA-CST将成为促进该领域研究的一种有价值的方法。