Department of Food and Nutrition, Kookmin University, Seoul, Republic of Korea.
Department of Food and Nutrition, Kookmin University, Seoul, Republic of Korea.
Anal Chim Acta. 2023 Nov 1;1280:341693. doi: 10.1016/j.aca.2023.341693. Epub 2023 Aug 7.
Loop-mediated isothermal amplification (LAMP), a rapid and sensitive isothermal nucleic acid amplification method, is a promising alternative to other molecular amplification techniques due to its superior specificity and sensitivity. However, due to primer dimerization, LAMP results in nonspecific and nontemplate amplification. And during the amplification confirmation process, there is carry-over contamination. These factors can result in false-positive results that overestimate the amount of DNA, preventing accurate detection. This review outlined several techniques for reducing false-positive LAMP results before amplification and confirming false-positive results after amplification. Before the amplification step, DNA polymerase activity can be decreased with organic additives such as dimethyl sulfoxide, betaine, and pullulan to prevent nonspecific amplification. The enzyme uracil-DNA-glycosylase (UDG) can eliminate false-positive results caused by carry-over contamination, and the hot-start effect with gold nanoparticles can reduce nonspecific amplification. When confirming false-positive results using clustered regularly interspaced short palindromic repeats, guide RNA accurately detects LAMP amplification, allowing differentiation from nonspecific amplification. By confirming amplification, the colorimetric change in the deoxyribozyme (DNAzyme) formed by the reaction of the G-quadruplex sequence of the LAMP amplicon and hemin can distinguish false-positive results. Lateral flow immunoassay can distinguish false-positive results by accurately recognizing hybridized probes to LAMP amplicons.
环介导等温扩增(LAMP)是一种快速、敏感的等温核酸扩增方法,由于其具有优越的特异性和灵敏度,是其他分子扩增技术的一种很有前途的替代方法。然而,由于引物二聚化,LAMP 会导致非特异性和非模板扩增。并且在扩增确认过程中,存在携带污染。这些因素可能导致假阳性结果,高估 DNA 的量,从而无法准确检测。本文综述了几种在扩增前降低假阳性 LAMP 结果和在扩增后确认假阳性结果的技术。在扩增步骤之前,可以通过添加二甲亚砜、甜菜碱和普鲁兰等有机添加剂来降低 DNA 聚合酶的活性,从而防止非特异性扩增。尿嘧啶-DNA 糖基化酶(UDG)可以消除由携带污染引起的假阳性结果,而金纳米粒子的热启动效应可以减少非特异性扩增。使用簇状规则间隔短回文重复序列(CRISPR)确认假阳性结果时,指导 RNA 可以准确检测 LAMP 扩增,从而将其与非特异性扩增区分开来。通过确认扩增,可以通过反应 LAMP 扩增子的 G-四链体序列和血红素形成的脱氧核酶(DNAzyme)的比色变化来区分假阳性结果。侧流免疫分析可以通过准确识别与 LAMP 扩增子杂交的探针来区分假阳性结果。