Zhang Yiming, Ru Nan, Xue Zhaowen, Gan Wenyi, Pan Ruilin, Wu Zelin, Chen Zihang, Wang Huajun, Zheng Xiaofei
Department of Sports Medicine, The First Affiliated Hospital, Guangdong Provincial Key Laboratory of Speed Capability, The Guangzhou Key Laboratory of Precision Orthopedics and Regenerative Medicine, Jinan University, Guangzhou, China.
Guangdong Engineering Research Center of Chinese Medicine & Disease Susceptibility, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of the Chinese Ministry of Education, Guangdong Province Key Laboratory of Pharmacodynamic Constituents of Traditional Chinese Medicine and NewDrugs Research, Guangzhou, China.
J Bone Oncol. 2023 Oct 5;43:100506. doi: 10.1016/j.jbo.2023.100506. eCollection 2023 Dec.
Mitochondrial damage is related to the functional properties of immune cells as well as to tumorigenesis and progression. Nevertheless, there is an absence concerning the systematic evaluation of mitochondria-associated lncRNAs (MALs) in the immune profile and tumor microenvironment of osteosarcoma patients. Based on transcriptomic and clinicopathological data from the TARGET database, MAL-related patterns were ascertained by consistent clustering, and gene set variation analysis of the different patterns was completed. Next, a MAL-derived scoring system was created using Cox and LASSO regression analyses and validated by Kaplan-Meier and ROC curves. The GSEA, ESTIMATE, and CIBERSORT algorithms were utilized to characterize the immune status and underlying biological functions in the different MAL score groups. MAL-derived risk scores were well stabilized and outperformed traditional clinicopathological features to reliably predict 5-year survival in osteosarcoma cohorts. Moreover, patients with increased MAL scores were observed to suffer from poorer prognosis, higher tumor purity, and an immunosuppressive microenvironment. Based on estimated half-maximal inhibitory concentrations, the low-MAL score group benefited more from gemcitabine and docetaxel, and less from thapsigargin and sunitinib compared to the high-MAL score group. Pan-cancer analysis demonstrated that six hub MALs were strongly correlated with clinical outcomes, immune subtypes, and tumor stemness indices in various common cancers. Finally, we verified the expression patterns of hub MALs in osteosarcoma with qRT-PCR. In summary, we identified the crosstalk between prognostic MALs and tumor-infiltrating immune cells in osteosarcoma, providing a potential strategy to ameliorate clinical stratification management.
线粒体损伤与免疫细胞的功能特性以及肿瘤的发生和发展相关。然而,目前缺乏对骨肉瘤患者免疫特征和肿瘤微环境中线粒体相关长链非编码RNA(MALs)的系统评估。基于TARGET数据库的转录组和临床病理数据,通过一致性聚类确定了MAL相关模式,并完成了不同模式的基因集变异分析。接下来,使用Cox和LASSO回归分析创建了一个MAL衍生的评分系统,并通过Kaplan-Meier曲线和ROC曲线进行验证。利用GSEA、ESTIMATE和CIBERSORT算法来表征不同MAL评分组的免疫状态和潜在生物学功能。MAL衍生的风险评分具有良好的稳定性,并且在预测骨肉瘤队列的5年生存率方面优于传统的临床病理特征。此外,观察到MAL评分升高的患者预后较差、肿瘤纯度较高且处于免疫抑制微环境。基于半数最大抑制浓度估计,与高MAL评分组相比,低MAL评分组从吉西他滨和多西他赛中获益更多,而从毒胡萝卜素和舒尼替尼中获益更少。泛癌分析表明,六个核心MAL与各种常见癌症的临床结局、免疫亚型和肿瘤干性指数密切相关。最后,我们用qRT-PCR验证了骨肉瘤中核心MAL的表达模式。总之,我们确定了骨肉瘤中预后性MAL与肿瘤浸润免疫细胞之间的相互作用,为改善临床分层管理提供了一种潜在策略。