Indian Institute of Technology (Banaras Hindu University), Varanasi, India.
Department of Computer Science, Cardiff Metropolitan University, Cardiff, UK.
Stud Health Technol Inform. 2023 Oct 20;309:267-271. doi: 10.3233/SHTI230794.
Autism Spectrum Disorder (ASD) is a highly heterogeneous condition, due to high variance in its etiology, comorbidity, pathogenesis, severity, genetics, and brain functional connectivity (FC). This makes it devoid of any robust universal biomarker. This study aims to analyze the role of age and multivariate patterns in brain FC and their accountability in diagnosing ASD by deep learning algorithms. We utilized functional magnetic resonance imaging data of three age groups (6 to 11, 11 to 18, and 6 to 18 years), available with public databases ABIDE-I and ABIDE-II, to discriminate between ASD and typically developing. The blood-oxygen-level dependent time series were extracted using the Gordon's, Harvard Oxford and Diedrichsen's atlases, over 236 regions of interest, as 236x236 sized FC matrices for each participant, with Pearson correlations. The feature sets, in the form of FC heat maps were computed with respect to each age group and were fed to a convolutional neural network, such as MobileNetV2 and DenseNet201 to build age-specific diagnostic models. The results revealed that DenseNet201 was able to adapt and extract better features from the heat maps, and hence returned better accuracy scores. The age-specific dataset, with participants of ages 6 to 11 years, performed best, followed by 11 to 18 years and 6 to 18 years, with accuracy scores of 72.19%, 71.88%, and 69.74% respectively, when tested using the DenseNet201. Our results suggest that age-specific diagnostic models are able to counter heterogeneity present in ASD, and that enables better discrimination.
自闭症谱系障碍(ASD)是一种高度异质的疾病,其病因、共病、发病机制、严重程度、遗传学和大脑功能连接(FC)差异很大。这使得它缺乏任何强大的通用生物标志物。本研究旨在通过深度学习算法分析大脑 FC 中的年龄和多变量模式的作用及其在诊断 ASD 中的可解释性。我们利用公共数据库 ABIDE-I 和 ABIDE-II 中三个年龄组(6 至 11 岁、11 至 18 岁和 6 至 18 岁)的功能磁共振成像数据,来区分 ASD 和典型发育者。使用 Gordon's、Harvard Oxford 和 Diedrichsen 图谱提取血氧水平依赖时间序列,在每个参与者的 236 个感兴趣区域上获得 236x236 大小的 FC 矩阵,并进行 Pearson 相关分析。将以 FC 热图形式的特征集相对于每个年龄组进行计算,并将其输入卷积神经网络(如 MobileNetV2 和 DenseNet201),以构建年龄特异性诊断模型。结果表明,DenseNet201 能够更好地适应和提取热图中的特征,从而返回更好的准确性分数。年龄特异性数据集,参与者年龄在 6 至 11 岁之间,表现最佳,其次是 11 至 18 岁和 6 至 18 岁,使用 DenseNet201 测试时,准确率分别为 72.19%、71.88%和 69.74%。我们的研究结果表明,年龄特异性诊断模型能够应对 ASD 中的异质性,从而实现更好的区分。