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非血红素铁酶催化的立体发散性硝基烷烃环丙烷化反应的机理分析。

Mechanistic Analysis of Stereodivergent Nitroalkane Cyclopropanation Catalyzed by Nonheme Iron Enzymes.

机构信息

Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.

Collaborative Research Institute for Innovative Microbiology, The University of Tokyo, Tokyo 113-8657, Japan.

出版信息

J Am Chem Soc. 2023 Nov 8;145(44):24210-24217. doi: 10.1021/jacs.3c08413. Epub 2023 Oct 24.

Abstract

BelL and HrmJ are α-ketoglutarate-dependent nonheme iron enzymes that catalyze the oxidative cyclization of 6-nitronorleucine, resulting in the formation of two diastereomeric 3-(2-nitrocyclopropyl)alanine (Ncpa) products containing -cyclopropane rings with (1'2') and (1'2') configurations, respectively. Herein, we investigate the catalytic mechanism and stereodivergency of the cyclopropanases. The results suggest that the nitroalkane moiety of the substrate is first deprotonated to produce the nitronate form. Spectroscopic analyses and biochemical assays with substrates and analogues indicate that an iron(IV)-oxo species abstracts pro-H from C4 to initiate intramolecular C-C bond formation. A hydroxylation intermediate is unlikely to be involved in the cyclopropanation reaction. Additionally, a genome mining approach is employed to discover new homologues that perform the cyclopropanation of 6-nitronorleucine to generate -configured Ncpa products with (1'2') or (1'2') stereochemistries. Sequence and structure comparisons of these cyclopropanases enable us to determine the amino acid residues critical for controlling the stereoselectivity of cyclopropanation.

摘要

BelL 和 HrmJ 是依赖于 α-酮戊二酸的非血红素铁酶,它们催化 6-硝基正亮氨酸的氧化环化,生成两个非对映异构体的 3-(2-硝基环丙基)丙氨酸(Ncpa)产物,分别含有(1'2')和(1'2')构型的 -环丙烷环。本文研究了环丙烷酶的催化机制和立体选择性。结果表明,底物的硝基烷部分首先去质子化生成硝酸盐形式。用底物和类似物进行光谱分析和生化分析表明,铁(IV)-氧物种从 C4 夺取质子,引发分子内 C-C 键形成。羟化中间物不太可能参与环丙烷化反应。此外,采用基因组挖掘方法发现新的同源物,它们催化 6-硝基正亮氨酸的环丙烷化,生成(1'2')或(1'2')立体化学构型的 -构型 Ncpa 产物。对这些环丙烷酶的序列和结构比较使我们能够确定控制环丙烷化立体选择性的关键氨基酸残基。

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