Liu Xianqiang, Li Dingchang, Gao Wenxing, Zhao Wen, Jin Lujia, Chen Peng, Liu Hao, Zhao Yingjie, Dong Guanglong
Medical School of Chinese PLA, Beijing, China.
Department of General Surgery, The First Medical Center, Chinese PLA General Hospital, Beijing, China.
Front Genet. 2023 Oct 9;14:1202849. doi: 10.3389/fgene.2023.1202849. eCollection 2023.
The correlation of type 2 diabetes mellitus (T2DM) with colorectal cancer (CRC) has garnered considerable attention in the scientific community. Despite this, the molecular mechanisms underlying the interaction between these two diseases are yet to be elucidated. Hence, the present investigation aims to explore the shared gene signatures, immune profiles, and drug sensitivity patterns that exist between CRC and T2DM. RNA sequences and characteristics of patients with CRC and T2DM were retrieved from The Cancer Genome Atlas and Gene Expression Omnibus databases. These were investigated using weighted gene co-expression network analysis (WGCNA) to determine the co-expression networks linked to the conditions. Genes shared between CRC and T2DM were analyzed by univariate regression, followed by risk prognosis assessment using the LASSO regression model. Various parameters were assessed through different software such as the ESTIMATE, CIBERSORT, AND SSGSEA utilized for tumor immune infiltration assessment in the high- and low-risk groups. Additionally, pRRophetic was utilized to assess the sensitivity to chemotherapeutic agents in both groups. This was followed by diagnostic modeling using logistic modeling and clinical prediction modeling using the nomogram. WGCNA recognized four and five modules that displayed a high correlation with T2DM and CRC, respectively. In total, 868 genes were shared between CRC and T2DM, with 14 key shared genes being identified in the follow-up analysis. The overall survival (OS) of patients in the low-risk group was better than that of patients in the high-risk group. In contrast, the high-risk group exhibited higher expression levels of immune checkpoints The Cox regression analyses established that the risk-score model possessed independent prognostic value in predicting OS. To facilitate the prediction of OS and cause-specific survival, the nomogram was established utilizing the Cox regression model. The T2DM + CRC risk-score model enabled independent prediction of OS in individuals with CRC. Moreover, these findings revealed novel genes that hold promise as therapeutic targets or biomarkers in clinical settings.
2型糖尿病(T2DM)与结直肠癌(CRC)之间的相关性已在科学界引起了相当大的关注。尽管如此,这两种疾病之间相互作用的分子机制仍有待阐明。因此,本研究旨在探索CRC和T2DM之间存在的共同基因特征、免疫图谱和药物敏感性模式。从癌症基因组图谱(The Cancer Genome Atlas)和基因表达综合数据库(Gene Expression Omnibus)中检索CRC和T2DM患者的RNA序列及特征。使用加权基因共表达网络分析(WGCNA)对这些数据进行研究,以确定与这些疾病相关的共表达网络。通过单变量回归分析CRC和T2DM之间共享的基因,随后使用LASSO回归模型进行风险预后评估。通过不同软件评估各种参数,如用于评估高风险和低风险组肿瘤免疫浸润的ESTIMATE、CIBERSORT和SSGSEA。此外,使用pRRophetic评估两组对化疗药物的敏感性。随后使用逻辑模型进行诊断建模,并使用列线图进行临床预测建模。WGCNA分别识别出与T2DM和CRC高度相关的4个和5个模块。CRC和T2DM之间总共共享868个基因,在后续分析中确定了14个关键共享基因。低风险组患者的总生存期(OS)优于高风险组患者。相比之下,高风险组表现出更高的免疫检查点表达水平。Cox回归分析表明,风险评分模型在预测OS方面具有独立的预后价值。为便于预测OS和特定病因生存期,利用Cox回归模型建立了列线图。T2DM + CRC风险评分模型能够独立预测CRC患者的OS。此外,这些发现揭示了有望成为临床治疗靶点或生物标志物的新基因。