Li Jinling, Sharma Mahima, Meek Richard, Alhifthi Amani, Armstrong Zachary, Soler Niccolay Madiedo, Lee Mihwa, Goddard-Borger Ethan D, Blaza James N, Davies Gideon J, Williams Spencer J
School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne Parkville Victoria 3010 Australia
York Structural Biology Laboratory, Department of Chemistry, University of York York YO10 5DD UK
Chem Sci. 2023 Sep 25;14(41):11429-11440. doi: 10.1039/d3sc01594g. eCollection 2023 Oct 25.
Sulfolactate (SL) is a short-chain organosulfonate that is an important reservoir of sulfur in the biosphere. SL is produced by oxidation of sulfolactaldehyde (SLA), which in turn derives from sulfoglycolysis of the sulfosugar sulfoquinovose, or through oxidation of 2,3-dihydroxypropanesulfonate. Oxidation of SLA is catalyzed by SLA dehydrogenases belonging to the aldehyde dehydrogenase superfamily. We report that SLA dehydrogenase GabD from the sulfoglycolytic bacterium SRDI565 can use both NAD and NADP as cofactor to oxidize SLA, and indicatively operates through a rapid equilibrium ordered mechanism. We report the cryo-EM structure of GabD bound to NADH, revealing a tetrameric quaternary structure and supporting proposal of organosulfonate binding residues in the active site, and a catalytic mechanism. Sequence based homology searches identified SLA dehydrogenase homologs in a range of putative sulfoglycolytic gene clusters in bacteria predominantly from the phyla Actinobacteria, Firmicutes, and Proteobacteria. This work provides a structural and biochemical view of SLA dehydrogenases to complement our knowledge of SLA reductases, and provide detailed insights into a critical step in the organosulfur cycle.
磺基乳酸(SL)是一种短链有机磺酸盐,是生物圈中硫的重要储存库。SL由磺基乙醛(SLA)氧化产生,而SLA又来源于磺糖磺基喹诺糖的磺糖酵解,或通过2,3 - 二羟基丙烷磺酸盐的氧化产生。SLA的氧化由属于醛脱氢酶超家族的SLA脱氢酶催化。我们报道,来自磺糖酵解细菌SRDI565的SLA脱氢酶GabD可以使用NAD和NADP作为辅因子来氧化SLA,并表明其通过快速平衡有序机制发挥作用。我们报道了与NADH结合的GabD的冷冻电镜结构,揭示了四聚体四级结构,并支持了活性位点中有机磺酸盐结合残基的提议以及催化机制。基于序列的同源性搜索在主要来自放线菌门、厚壁菌门和变形菌门的细菌的一系列假定磺糖酵解基因簇中鉴定出了SLA脱氢酶同源物。这项工作提供了SLA脱氢酶的结构和生化观点,以补充我们对SLA还原酶的了解,并为有机硫循环中的关键步骤提供详细见解。