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来自于……的DHPS-3-脱氢酶对-2,3-二羟基丙烷磺酸盐立体特异性氧化的结构与动力学见解。

Structural and kinetic insights into the stereospecific oxidation of -2,3-dihydroxypropanesulfonate by DHPS-3-dehydrogenase from .

作者信息

Burchill Laura, Kaur Arashdeep, Nastasovici Artur, Lee Mihwa, Williams Spencer J

机构信息

School of Chemistry, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne Parkville Victoria 3010 Australia

出版信息

Chem Sci. 2024 Sep 9;15(38):15757-68. doi: 10.1039/d4sc05114a.

Abstract

2,3-Dihydroxypropanesulfonate (DHPS) and sulfolactate (SL) are environmentally important organosulfur compounds that play key roles as metabolic currencies in the sulfur cycle. Despite their prevalence, the pathways governing DHPS and SL production remain poorly understood. Here, we study DHPS-3-dehydrogenase from (HpsN), a bacterium capable of utilizing DHPS as a sole carbon source. Kinetic analysis of HpsN reveals a strict preference for -DHPS, catalyzing its 4-electron oxidation to -SL, with high specificity for NAD over NADP. The 3D structure of HpsN in complex with Zn, NADH and -SL, elucidated through X-ray crystallography, reveals a fold akin to bacterial and plant histidinol dehydrogenases with similar coordination geometry around the octahedral Zn centre and involving the sulfonate group as a ligand. A key residue, His126, distinguishes DHPS dehydrogenases from histidinol dehydrogenases, by structural recognition of the sulfonate substrate of the former. Site-directed mutagenesis pinpoints Glu318, His319, and Asp352 as active-site residues important for the catalytic activity of HpsN. Taxonomic and pathway distribution analysis reveals the prevalence of HpsN homologues within different pathways of DHPS catabolism and across bacterial classes including Alpha-, Beta-, Gamma-, and Deltaproteobacteria and Desulfobacteria, emphasizing its importance in the biogeochemical sulfur cycle.

摘要

2,3 - 二羟基丙烷磺酸盐(DHPS)和磺基乳酸盐(SL)是环境中重要的有机硫化合物,在硫循环中作为代谢货币发挥关键作用。尽管它们普遍存在,但控制DHPS和SL产生的途径仍知之甚少。在此,我们研究了来自[具体细菌名称未给出](HpsN)的DHPS - 3 - 脱氢酶,该细菌能够将DHPS作为唯一碳源利用。对HpsN的动力学分析表明,它对β - DHPS有严格偏好,催化其4电子氧化为β - SL,对NAD的特异性高于NADP。通过X射线晶体学解析的与锌、NADH和β - SL复合的HpsN的三维结构显示,其折叠结构类似于细菌和植物组氨醇脱氢酶,在八面体锌中心周围具有相似的配位几何结构,且涉及磺酸盐基团作为配体。一个关键残基His126通过对前者磺酸盐底物的结构识别,将DHPS脱氢酶与组氨醇脱氢酶区分开来。定点诱变确定Glu318、His319和Asp352为对HpsN催化活性重要的活性位点残基。分类学和途径分布分析表明,HpsN同源物在DHPS分解代谢的不同途径以及包括α - 、β - 、γ - 和δ - 变形菌纲及脱硫菌纲在内的不同细菌类群中普遍存在,强调了其在生物地球化学硫循环中的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6ce/11445818/065226b03b1e/d4sc05114a-f1.jpg

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